Protein

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Genbank accession
YP_010669443.1 [GenBank]
Protein name
tail collar protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MPVYNYSTTPLYVSEGQTVQFRYEAPNTFDTLEQIEVQIGELTVFWVIQTEKEDFAPEPFELQDINPAEIDQVYTYAETSEGPDAAPFGGGSTFNPLRTGEEVITIAGLSDGTQAPITISSNVIDAADWAYRIRRASTGAWPAFTTGDNYPTAQQFVENLDQIQVRLKASANPADSKRVTVTVGTGSESWNITTGALPVNEPNPVPVFNPLNGLELDVTIYSNIVQILGLNTDAAIAVDQSGELRIASSNATTNVVSGGEQYAVLSSGTAWASSGTVSNGDYVQLRGQSAGTSTTTKIFSVDIGDGIGIAGWQTLTGAGVDRIPDNFIFQDLVEVVPGTTNIASTVSFGPASGDAALVQGLTDGLLVPVTVRAADTTATNPRVRINGGSTGPFSNIEVQNGDTIQLVVDADPDLSVAPTTESVQLAINVGDRPITPWSVTNWFGPDETPSFVQPANLQNQTPGGFAILGPIGLTNFNTDITISATAPTAYDSGGAATGEALGSQVLISINGDTPVAGPRTASPDNTGNPVTVTFTIPQPGNADADPVEGLSHYTEFDISLGLAPTFTFRSFNYAVKPVPPSYQGVWYSNKNEFFDEAAYEAAGSPVANAGTYYRAPKFDGYSTGTVIAVTKESINGYGDLEDRFPGFLECDGTAYNAADYPFLFDAIGTSYGFDGTPGEYDESTNAYSGTFRVPDYRNRRLAGAGIVDGNRGSSAFLEANVGSYEIPGSTGGWWYVTDVDVAGPDPLEQVIAPAGSTTGTESIFFELGTPKTFGTELLSTEVGFNVTGQVNATIGPVQEKTVIVPSHEHVIVTGQTEDVSGDPVIPWGTRAYYGTQGSGERGPSPRGPDEPSESRIRGYWRGLDALNASTFDQQLGLTFGPPQTLDDYLPLGPEGDSTEATFGNYWASPTGPISGLSPRQNYFQVNSGTANDAGVIDTAESRVRVDEYASPNALLSHSHLLGLDIVGDINLDFSYGNANSFGGQRAGLPNFNNVATLTFNQADVAIELNEAEFTWNNSTKPIPTVAMDPEKKVPVVAPFHKIKYIIKAY
Physico‐chemical
properties
protein length:1049 AA
molecular weight: 111144,58640 Da
isoelectric point:4,14449
aromaticity:0,09724
hydropathy:-0,22135

Domains

Domains [InterPro]
DC_0346
STR
1–1033
DC_0346
IPR037053
ATT
619–697
IPR037053
IPR011083
ATT
645–699
IPR011083
SSF88874
STR
646–724
SSF88874
YP_010669443.1
1 1049
Architecture
STR
ATT
STR
STR 1-618 | ATT 619-699 | STR 700-1033 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669443.1
1 1049
Domain Start End Length (AA) Confidence
N-terminal 1 696 696 0,7953
Central domain 697 927 232 0,6439
C-terminal 928 1049 121 0,4879
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-696
Central
697-927
C-terminal
928-1049

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-2
[NCBI] 		2783669 Uroviricota > Caudoviricetes > Pantevenvirales > Yushanluvirus > Yushanluvirus satich
Host Synechococcus sp. WH 8102
[NCBI] 		84588 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669443.1 [NCBI]
Genbank nucleotide accession
NC_070960 [NCBI]
CDS location
range 173755 -> 176904
strand +
CDS
ATGCCAGTCTATAATTATAGTACAACTCCATTATACGTTAGCGAAGGACAGACAGTTCAGTTTCGCTATGAAGCACCAAATACCTTCGACACGCTTGAGCAAATCGAGGTTCAGATTGGTGAGCTTACAGTATTCTGGGTTATCCAGACTGAAAAGGAAGATTTTGCTCCAGAACCTTTTGAACTGCAGGACATCAATCCCGCAGAAATTGATCAAGTATATACATATGCAGAAACATCAGAAGGACCAGATGCTGCTCCTTTCGGTGGTGGATCAACATTCAATCCACTAAGAACTGGAGAAGAAGTAATTACTATTGCTGGATTGTCTGATGGAACTCAAGCACCTATTACAATTTCTTCTAATGTAATTGATGCAGCAGATTGGGCATATAGAATTAGACGTGCATCTACAGGTGCATGGCCAGCATTTACTACTGGAGATAATTATCCTACTGCTCAGCAGTTTGTAGAAAACCTTGACCAGATTCAGGTAAGACTTAAAGCATCTGCAAATCCAGCAGATTCTAAGAGAGTTACTGTTACTGTAGGAACTGGATCTGAGTCTTGGAATATTACTACTGGTGCTCTTCCAGTAAATGAACCAAATCCAGTTCCTGTTTTCAATCCTTTGAATGGATTAGAACTTGATGTTACAATCTATAGTAATATTGTTCAGATTCTTGGATTGAATACTGATGCTGCAATTGCAGTTGATCAGTCAGGAGAATTGAGGATTGCAAGTAGTAATGCTACAACTAATGTTGTTAGTGGTGGTGAGCAGTATGCTGTTTTAAGTAGTGGAACTGCATGGGCATCATCTGGAACAGTATCTAATGGCGATTACGTCCAACTAAGAGGACAATCAGCAGGAACATCAACTACAACTAAAATTTTCTCTGTTGATATTGGAGATGGTATTGGTATTGCTGGATGGCAAACTCTCACTGGAGCAGGAGTTGACAGAATTCCTGATAACTTTATTTTCCAAGATTTAGTAGAAGTTGTTCCAGGAACTACAAACATTGCATCTACAGTATCATTTGGACCAGCATCTGGAGATGCTGCACTTGTTCAAGGTTTAACTGATGGTCTTTTAGTTCCTGTTACAGTTAGAGCAGCAGATACCACCGCAACCAACCCAAGAGTTAGAATTAACGGTGGATCAACAGGACCTTTCTCTAATATTGAAGTCCAGAATGGAGATACTATTCAATTAGTAGTAGATGCTGATCCAGATCTATCAGTTGCACCAACTACAGAAAGTGTTCAACTTGCAATTAATGTTGGAGACAGACCAATTACACCATGGAGTGTTACTAACTGGTTTGGACCAGACGAGACACCATCATTTGTTCAACCAGCAAACTTACAGAATCAAACTCCTGGTGGGTTTGCTATTCTTGGTCCTATTGGATTGACGAATTTCAATACTGATATTACAATTAGTGCTACAGCACCAACTGCATATGATAGTGGTGGTGCCGCAACTGGAGAAGCATTAGGATCACAAGTTTTGATTTCTATTAATGGAGATACACCAGTTGCTGGACCAAGAACCGCAAGTCCAGATAATACTGGTAATCCAGTAACAGTTACATTTACTATTCCTCAACCAGGAAATGCTGATGCAGATCCAGTAGAAGGTCTCTCTCATTATACTGAGTTTGACATCTCATTAGGTTTAGCACCTACATTTACATTTCGTTCATTCAACTATGCAGTAAAACCAGTTCCACCATCATATCAAGGTGTCTGGTATTCTAATAAAAATGAATTCTTTGATGAAGCAGCATATGAGGCAGCAGGGTCTCCAGTTGCTAATGCTGGCACATACTATAGAGCACCTAAGTTTGATGGTTATTCAACTGGAACTGTTATTGCAGTAACTAAAGAAAGTATCAATGGTTATGGTGATCTTGAGGATAGATTCCCAGGATTCTTAGAGTGTGATGGTACAGCATACAATGCAGCAGATTATCCATTCTTGTTTGATGCAATTGGAACTTCATATGGATTTGATGGAACTCCAGGTGAATATGATGAGTCTACTAATGCATATTCAGGAACATTTAGAGTCCCTGATTATAGAAATAGAAGACTTGCTGGTGCTGGTATTGTAGATGGTAATAGAGGATCTTCTGCATTCTTAGAAGCAAATGTCGGTTCATATGAAATCCCAGGATCAACTGGTGGTTGGTGGTATGTTACCGATGTTGATGTTGCTGGTCCTGATCCTCTTGAGCAAGTTATTGCACCTGCTGGATCAACCACTGGTACGGAATCAATCTTCTTTGAACTTGGAACACCAAAAACATTTGGTACTGAATTACTTTCAACCGAAGTTGGATTTAATGTTACTGGTCAAGTTAATGCTACAATTGGACCTGTACAAGAAAAAACTGTTATTGTTCCTTCTCACGAACACGTTATTGTTACTGGACAGACAGAAGATGTTAGTGGTGATCCTGTAATTCCATGGGGAACTCGTGCATACTATGGTACACAAGGTAGTGGTGAAAGAGGACCATCACCTCGTGGTCCTGACGAACCATCAGAATCCAGAATTAGAGGTTACTGGAGAGGATTAGATGCGTTGAATGCATCTACGTTTGATCAACAACTTGGATTGACATTTGGACCTCCTCAGACATTGGATGATTATCTACCTCTTGGTCCTGAAGGTGACTCTACTGAGGCAACATTTGGTAACTATTGGGCATCACCTACTGGTCCTATTTCTGGTTTGTCACCAAGACAAAATTATTTCCAAGTAAACTCTGGTACTGCTAATGATGCTGGTGTTATTGACACAGCAGAAAGTCGTGTTAGAGTGGATGAATATGCAAGTCCTAATGCTCTTTTGAGTCATAGTCATCTTCTTGGACTTGACATCGTTGGAGATATTAATCTTGACTTCTCTTATGGTAATGCTAATAGTTTTGGTGGTCAACGCGCTGGTCTACCAAACTTCAATAATGTTGCAACTTTAACCTTTAACCAAGCAGATGTTGCTATTGAATTGAATGAAGCAGAGTTTACATGGAATAACTCTACAAAACCAATTCCAACAGTTGCTATGGATCCAGAGAAGAAAGTTCCTGTCGTAGCACCATTCCATAAAATCAAATATATAATTAAGGCATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7088e5038992b6e8db0e2540c2268ef69210e89183946c03cc8a48f5c2a41907
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5318
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-2 from the Yellow Sea, China Jiang,T. and Luo,L. 2019-04-04 — GenBank