Protein

View in Explore
Genbank accession
AOP04170.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MKPTAGDVEALSVNGGRLNGSLGIGTDNALGGNSIVLGDNDTGFKQDGDGVLGIYANNARVGYIDNSGLHMSVDVLTNGGIRAGDGKRLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSWLSLWINNNFVADVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDYQGENIDGIAYAPLQKRVGNQWYTVQGGTA
Physico‐chemical
properties
protein length:244 AA
molecular weight: 25822,91000 Da
isoelectric point:4,44654
aromaticity:0,09016
hydropathy:-0,32951

Domains

Domains [InterPro]
DC_0217
STR
4–240
DC_0217
IPR051934
Unmapped
21–243
IPR051934
G3DSA:6.20.70.20
RBD
148–179
G3DSA:6.20.70.20
AOP04170.1
1 244
Architecture
STR
STR 4-240 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AOP04170.1
1 244
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,3301
Central domain 24 222 200 0,3630
C-terminal 223 244 21 0,9989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-222
C-terminal
223-244

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 118970_sal3
[NCBI] 		1813771 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AOP04170.1 [NCBI]
Genbank nucleotide accession
KU927493.2 [NCBI]
CDS location
range 16064 -> 16798
strand +
CDS
ATGAAACCCACAGCCGGTGACGTTGAGGCACTGTCAGTTAATGGAGGGCGACTGAATGGGTCTTTAGGCATTGGTACTGACAATGCGCTGGGCGGTAATTCAATTGTGCTCGGTGATAACGATACCGGGTTTAAACAGGATGGCGACGGCGTTCTGGGTATTTACGCCAATAATGCCCGGGTCGGTTATATCGATAATTCCGGGTTACACATGTCAGTAGATGTTCTCACTAATGGTGGCATACGAGCAGGTGACGGAAAAAGGCTTTCACTGACGAGCAATAATAATTCGACAATGACAGCCACGTTTAATTTATGGGGCGATGCAAACAGGCCAACAGTTATTGAACTGGACGACGATCAGGGATGGCATCTGTACAGCCAGCGAAATCCTGATGGTTCGATTGTCTTTACGGTCAATGGCGATATCACCGCTAACACGCTTCGTGCAGGCGGGGCCATCTATCAGAATAACGGCGACATCTTTGGTTCTGTCTGGGGGAATAGCTGGCTGAGTCTGTGGATTAATAATAATTTCGTCGCAGATGTTCAGTTAGGGGCTGGCACATCAGTGACTACCTGGAACAATGCAGGTTCCTGGCCTAACACTCCCGGATATGTAGTTACCTCCGTCTGGAAAGATTATCAGGGCGAAAATATTGATGGTATTGCTTATGCGCCTTTGCAAAAACGAGTCGGGAATCAGTGGTATACCGTACAAGGGGGAACGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
db41397586747609a2b0fe51116fa88fde7b96c0b578458922852033926c1cbb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8060
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of a Myoviridae Bacteriophages infecting Salmonella enterica subsp. Enteridis Paradiso,R., Orsini,M., Borriello,G. and Galiero,G. 2016-12-29 — GenBank