Protein

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Genbank accession
YP_010674832.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MTHNTGNELESSDILDFSDNCENLDVLMNADQDYWTTRLGDKKPTVDYALRMAGFAPAGFDFTTGGVLKNGDRNKCVFNQADQTWYSWSGDLPYNVIAGSTPGEGWKVQVSPSIVTKLQELETRILALENK
Physico‐chemical
properties
protein length:131 AA
molecular weight: 14570,99190 Da
isoelectric point:4,44972
aromaticity:0,09924
hydropathy:-0,50763

Domains

Domains [InterPro]
DC_1559
ATT
1–125
DC_1559
G3DSA:2.10.10.80
ATT
59–107
G3DSA:2.10.10.80
IPR040775
RBD
69–104
IPR040775
YP_010674832.1
1 131
Architecture
ATT
ATT 1-125 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010674832.1
1 131
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,9969
Central domain 126 125 1 0,0088
C-terminal 126 131 5 0,9635
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-125
C-terminal
126-131

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage PS1
[NCBI] 		2591406 Uroviricota > Caudoviricetes > Chimalliviridae > Ferozepurvirus PS1 >
Host Aeromonas hydrophila subsp. hydrophila
[NCBI] 		196023 Pseudomonadota > Gammaproteobacteria > Aeromonadales > Aeromonadaceae > Aeromonas > Aeromonas hydrophila subsp. hydrophila

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010674832.1 [NCBI]
Genbank nucleotide accession
NC_070998.1 [NCBI]
CDS location
range 163590 -> 163985
strand +
CDS
ATGACTCATAACACTGGTAATGAACTTGAATCTTCAGATATCTTGGATTTTTCAGATAACTGTGAGAACTTAGATGTTTTAATGAATGCTGATCAAGACTATTGGACTACAAGACTTGGTGATAAGAAACCGACAGTTGATTACGCTTTGCGTATGGCTGGATTCGCCCCTGCTGGATTTGATTTCACCACAGGTGGTGTTTTAAAGAATGGTGATCGGAATAAGTGTGTATTTAACCAAGCTGATCAAACTTGGTATAGTTGGTCAGGCGACCTTCCTTATAATGTAATTGCTGGAAGTACACCTGGGGAAGGTTGGAAAGTTCAGGTTTCTCCCTCCATTGTTACTAAATTACAAGAATTGGAAACTAGGATTCTTGCTTTGGAAAATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84abb2b6a31e238a3e639a3f1805ff1f81a902b41a1d4c3bf8b173627b0b2834
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8031
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage PS1 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-04-30 — GenBank