Protein

View in Explore
Genbank accession
YP_010661143.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MANDPNNTYLVDANKDYTRVLFRPGYTPQDRELNAIQESLMRQITSIGDHLFKDGSQVLGGTIKSLQGKSLLIESTFGGNAVDVSAFMGQTIVEFDSAGIETGARGTVFAVSPETPGDPACLHYTDENVLVSIGSGSTIRISGSSTFASIRSFEQPVRDCLYARLLGGIFYFNKTFVRVDDQLIVYSKFDDLFSGYVGLQFTKKIVTEFDDKDLLNKARGFANFNGAGAHRELYQSSLISYSYNEERPANFVSLMEIQQGSIKAITTEPQYNEIQERLASDQDSTHGDFVVNYFKADLVDHITVPIKIIEPSRTSAFVLQATTAIPHNYSIGDPIRIDETSSYAGDYKVKEVLSTTVFTFDTARSNTVSEKNKTVYRTDHFGVQISAGKAYVKGYPVVLPGMTNIEIPKARTVDTIRNSALSVGYGRYVQADTLTGMFDTANKQQVLLRNASNATVGTARVHAVTKSGTKSNVYLFDIAINTGADASTITNIYAATGANGTAVTASFSSFNVRSANDRSLFQQIANYKIATLRPENVDSLSYTTLKILTAASASNSVTFALTGTDTFSGARGTDIKASNLWLTEYSIVKADGSAVTPTSVIIASDGKSITINAASMTGNITISAPVQIIPAVKKKTLKTKSYSTSAVTGTVRKYTFDVVDAISATVHDSTGADVTSLFKFDSGQRDDIYDFSSVTLQSGSVVPSAPLTIDIKYFEHSGTGYFSVDSYTGIDFSLIPSYVSEDLQTEYELTDIIDFRYVKTGASTYASSLTPIPEGFTVVDFNYYLPRKDIISLTKNGAVNIVGGLPSLNSIYPSISDSEMALFKVDILAFTKDYKEDVFIYQEQNRRYTMKDIGKIDQRVSRLEYETSLSLLESKAKTEDIVDVDGNSRYKTGFLVDNFSGHGVGDISSSDYRAAIDKENLILRPAFDQNAVGLDVFEIDGFSRVGNTDVGYFMTLPFTSEVLSENLIASKAVSVNPYLVTKRRGTALLNPSSDFWKDSTTAPVRNVDMTSDVNPKFNLGTVWNDWEETWSGSTTTRNSRNNSRTTTTTTREQRTGVRTSVDFVDTTQTIGKFVVDVNVSYYMRKVDIAFKLAGMRPDTDLHVFVDKENIDNLVSGVSTAPVGEGSVRTDGDGNAAGKIGIPNGRFRTGERLITFSDEPNNVSENATTEASFIFASSGLNVTEQTVTLSTSVPQLTRTPVSETRTSTTSNTVRDRIPVRNMFGNSGNNTSNGAAASDPLAQSVWISPDLYPNGAFLSEITVYMKRKPVDTSHPLILQIRPTVNGYPSSNHVNAFSEINVPNANVKIPTNTNDLNSILAAPTVIEFPVPIYVQPNDYFNFVLLSSHSDYEAYMSEMGQKIIGTDIQIYKQPVLGSSFRSQNGGTWTAYQNEDIMHSVKICKWTPNTLGSFSFRNLNVDELKYNTFNFRPQVIKFQDHVTEYTLTSRDSTTSNNVIERIVEDTNNDLKSERIIRDDTPDVKIGVVASTLDQYTAPLYEVNKCYAMLVSNVINNFGLVRRNFLIVNGGTGYTDDSVVTFTGGGGTGAVYKVKTEGGIIVDLIEVNQGSGYTSAPTVAVSGGTGAQITFSGVETDPINGNADARYVSKVVTLEDDYTTDRADIYLDISAPSGSDVKMYFRAKNNADAESIQLKEWTEITQNNRKTSTTDEFIETKFTADVTYTADNGAVFDEVNSVQVKIVLLSNNTSVVPKCKNFRFITSI
Physico‐chemical
properties
protein length:1718 AA
molecular weight: 188026,35360 Da
isoelectric point:5,08393
aromaticity:0,09488
hydropathy:-0,24464

Domains

Domains [InterPro]
DC_0414
STR
72–1011
DC_0414
IPR032096
STR
196–295
IPR032096 IPR032096
DC_0082
RBD
997–1718
DC_0082
YP_010661143.1
1 1718
Architecture
STR
RBD
STR 72-1011 | RBD 1012-1718
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y68
[NCBI] 		2509787 Uroviricota > Caudoviricetes > Pootjesviridae > Trinifflemingvirus > Trinifflemingvirus Y68
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010661143.1 [NCBI]
Genbank nucleotide accession
NC_070883.1 [NCBI]
CDS location
range 10885 -> 16041
strand -
CDS
ATGGCTAACGATCCGAACAACACCTACCTTGTCGATGCGAACAAAGACTACACGAGAGTCCTATTCCGTCCTGGATACACTCCACAGGATCGCGAACTGAATGCTATCCAAGAGTCTTTGATGCGTCAGATCACCTCGATCGGTGATCATCTATTCAAGGACGGATCGCAGGTTCTTGGCGGTACGATCAAAAGTCTGCAAGGCAAGTCTCTTCTCATCGAGAGCACGTTCGGCGGAAATGCTGTTGACGTCTCTGCTTTCATGGGTCAGACGATCGTTGAATTCGATTCTGCTGGTATCGAAACAGGTGCACGCGGTACTGTCTTCGCTGTCTCTCCTGAGACTCCTGGTGATCCTGCATGTCTGCACTACACTGACGAGAACGTTCTCGTTTCGATCGGTTCCGGTAGCACGATCCGCATCAGTGGCTCCTCGACTTTCGCTTCGATCAGGTCCTTCGAACAGCCGGTTCGTGATTGCCTCTACGCACGTCTCCTTGGCGGTATCTTCTACTTCAACAAGACCTTCGTTCGAGTCGATGACCAGTTGATCGTTTACTCGAAGTTCGATGATCTGTTCAGTGGTTACGTCGGTCTGCAGTTCACGAAGAAGATCGTAACCGAATTCGACGATAAGGATCTTCTGAACAAGGCTCGCGGCTTTGCAAACTTCAACGGTGCTGGTGCTCATCGTGAGCTCTATCAGTCTTCACTGATCTCGTACTCCTATAACGAAGAACGTCCTGCCAATTTCGTCTCTCTGATGGAAATCCAACAGGGCTCGATCAAGGCAATCACGACCGAACCTCAATACAACGAGATCCAGGAACGTCTTGCGAGTGATCAGGACTCCACCCACGGAGACTTTGTCGTCAACTACTTCAAGGCAGATCTGGTCGATCACATCACTGTTCCGATCAAGATCATCGAACCTTCCAGGACTTCTGCTTTCGTTCTTCAGGCAACGACTGCAATTCCTCATAATTACTCGATCGGAGATCCGATCCGTATCGATGAGACGTCCTCGTACGCAGGAGACTACAAGGTCAAGGAAGTCCTCTCGACGACTGTGTTCACTTTCGATACTGCTCGTTCGAACACTGTTTCTGAGAAGAACAAGACCGTCTACCGTACTGATCACTTCGGTGTTCAGATCTCTGCTGGTAAGGCATACGTCAAAGGATATCCTGTTGTTCTTCCTGGAATGACGAACATTGAAATTCCGAAGGCTCGCACTGTAGACACGATCCGTAACTCAGCTCTGTCTGTCGGATACGGTCGATACGTCCAGGCTGATACTCTCACTGGAATGTTCGACACTGCCAACAAGCAGCAGGTTCTTCTCCGTAACGCTTCGAATGCTACGGTAGGTACTGCTCGTGTCCACGCTGTCACGAAGTCTGGAACGAAGTCGAACGTCTATCTCTTCGATATCGCTATCAACACCGGAGCTGATGCTTCAACGATCACGAACATCTATGCTGCGACTGGTGCTAACGGTACTGCAGTCACCGCATCGTTCTCCTCGTTCAACGTTCGTTCTGCCAATGATCGTTCTCTGTTCCAGCAGATCGCAAACTACAAGATCGCGACTCTTCGTCCAGAGAACGTTGACTCGCTTTCGTACACCACTCTGAAGATCCTCACGGCTGCTTCTGCATCCAACAGTGTCACATTCGCTCTGACTGGTACTGACACCTTCTCCGGTGCACGCGGTACTGACATCAAGGCTTCGAATCTCTGGTTGACCGAATACTCGATCGTCAAGGCTGACGGCAGTGCAGTGACTCCCACGAGCGTCATCATCGCTTCTGACGGTAAGTCGATCACGATCAATGCTGCTTCGATGACTGGCAACATCACGATCAGTGCTCCGGTTCAGATCATTCCTGCTGTCAAAAAGAAGACTCTGAAGACGAAGAGCTACTCGACTTCGGCTGTTACCGGAACGGTTCGGAAGTACACTTTCGATGTGGTCGATGCGATCTCTGCAACTGTTCACGATAGCACCGGTGCAGACGTCACTTCGCTGTTCAAGTTCGACTCCGGTCAGAGAGACGACATCTACGACTTCAGCTCTGTAACTCTTCAGAGCGGTTCCGTGGTGCCTTCTGCTCCTCTGACGATCGACATCAAGTACTTCGAACACTCTGGCACTGGCTACTTCAGCGTTGACAGCTACACCGGTATCGACTTCTCATTGATCCCGTCGTACGTCTCCGAAGATCTCCAGACCGAATACGAGCTCACCGACATCATCGACTTCCGCTACGTGAAGACTGGTGCTTCGACTTATGCTTCGTCTCTGACTCCGATTCCGGAAGGCTTTACTGTCGTCGACTTCAACTACTATCTGCCTCGCAAGGACATCATTTCCTTGACGAAGAACGGTGCGGTCAACATCGTAGGTGGTCTGCCTTCTCTGAACTCGATCTATCCTTCGATTTCTGATAGCGAGATGGCTCTTTTCAAGGTCGATATCCTTGCGTTCACGAAGGACTACAAGGAAGACGTCTTCATTTACCAGGAACAGAACCGTCGATACACGATGAAAGATATCGGCAAGATCGACCAGCGTGTTTCTCGTCTCGAGTACGAAACCTCTCTGAGTCTCCTCGAGTCGAAAGCGAAGACTGAAGATATCGTAGACGTCGACGGTAACAGCCGATATAAGACTGGCTTCCTCGTCGATAACTTCTCTGGTCACGGCGTAGGCGACATCTCATCTTCAGACTATCGCGCTGCTATCGATAAGGAGAATCTGATCCTTCGTCCTGCATTCGATCAGAACGCTGTAGGTCTGGACGTCTTCGAAATCGACGGTTTCTCGCGAGTCGGTAACACCGATGTCGGCTACTTCATGACTCTGCCTTTCACATCAGAGGTCTTGTCTGAGAACCTTATTGCTTCGAAAGCTGTCTCTGTCAACCCTTACCTCGTGACCAAGCGTCGAGGCACTGCACTGCTCAATCCTTCTAGCGACTTCTGGAAGGACAGCACGACTGCTCCTGTTCGTAACGTGGACATGACGTCGGACGTCAATCCGAAGTTCAATCTCGGTACTGTCTGGAACGACTGGGAAGAGACTTGGTCTGGTTCTACGACGACTCGGAACTCGAGGAACAACTCGCGCACCACGACGACTACGACTCGTGAACAGAGAACTGGTGTTCGCACTTCTGTAGACTTCGTCGATACCACCCAGACGATCGGTAAGTTCGTAGTGGATGTCAACGTATCCTACTACATGCGAAAGGTGGACATCGCATTCAAGCTCGCTGGTATGAGACCTGACACTGATCTTCACGTCTTCGTAGACAAAGAGAACATTGACAATCTCGTATCTGGTGTAAGCACTGCTCCTGTCGGAGAAGGTTCTGTTCGAACTGACGGCGACGGCAATGCTGCTGGTAAGATCGGAATTCCGAACGGTCGCTTCCGTACTGGCGAACGTCTGATCACGTTCTCTGACGAACCGAACAACGTCTCTGAGAACGCGACCACCGAGGCTTCTTTCATCTTTGCTTCGTCCGGTCTGAACGTCACTGAACAGACTGTAACTCTTTCGACAAGTGTTCCTCAGCTCACAAGGACTCCTGTTTCTGAGACTCGCACGTCGACAACTTCGAATACAGTTCGCGATCGAATACCTGTCAGGAACATGTTCGGAAACAGCGGCAACAACACTTCGAATGGTGCAGCTGCGAGCGATCCTCTTGCACAGTCTGTCTGGATCTCTCCTGATCTGTATCCTAACGGTGCATTCCTTAGCGAGATCACTGTCTACATGAAGAGGAAGCCGGTTGACACTTCTCATCCGTTGATCCTTCAGATCCGTCCGACTGTGAACGGATATCCGTCTTCGAACCATGTGAACGCTTTCTCTGAAATCAACGTTCCGAACGCTAACGTCAAAATTCCGACGAACACGAACGATCTGAACTCGATCCTCGCAGCTCCGACTGTGATCGAATTCCCTGTTCCGATCTACGTGCAGCCGAACGACTACTTCAATTTCGTTCTGCTCTCGAGCCACTCTGACTACGAAGCTTACATGTCGGAGATGGGTCAGAAGATCATCGGTACTGACATCCAGATCTACAAGCAGCCTGTTCTCGGTTCTTCGTTCCGTTCTCAGAACGGCGGCACATGGACTGCCTATCAGAACGAAGATATCATGCATAGCGTGAAGATCTGCAAGTGGACTCCGAACACTCTCGGCAGCTTCAGCTTCCGTAACTTGAATGTAGACGAACTGAAGTACAACACCTTCAACTTCCGTCCGCAAGTCATCAAGTTCCAGGATCATGTCACAGAATACACTCTGACTTCGCGTGACTCAACGACTTCGAACAACGTGATTGAACGCATCGTCGAGGATACGAACAATGATCTGAAGTCCGAACGCATCATCCGTGATGACACTCCCGACGTGAAGATCGGTGTTGTAGCAAGCACTCTCGATCAGTACACCGCTCCTCTGTACGAGGTCAACAAGTGCTACGCGATGCTCGTCTCTAACGTGATCAACAACTTCGGCCTTGTACGTCGTAACTTCCTGATCGTCAACGGCGGCACTGGCTACACTGACGACAGTGTCGTAACGTTCACTGGCGGTGGTGGAACAGGTGCTGTCTACAAGGTGAAGACCGAAGGCGGTATCATCGTCGATCTCATCGAAGTCAACCAGGGTTCTGGCTACACGTCTGCTCCGACTGTTGCCGTCTCTGGTGGTACTGGTGCTCAGATCACCTTCTCTGGTGTCGAAACCGATCCGATCAACGGTAACGCCGATGCTCGATACGTCTCGAAGGTAGTCACTCTCGAAGACGACTACACGACCGACAGAGCAGACATCTATCTGGACATCAGCGCTCCTTCTGGTTCTGACGTCAAGATGTACTTCCGTGCGAAGAACAACGCCGACGCTGAGTCCATCCAGCTCAAGGAATGGACTGAGATCACGCAAAATAACAGAAAGACTTCTACGACTGACGAGTTTATCGAAACGAAGTTCACCGCAGACGTAACCTACACTGCTGACAACGGAGCTGTCTTCGACGAAGTCAATTCCGTACAGGTGAAAATCGTTCTTCTCTCGAACAACACGTCTGTCGTTCCGAAGTGCAAAAACTTCAGGTTCATCACTTCGATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a1b2190ffd25a9ac7f651c75c2d7cbc0c3fc111f66b7c147e418047de1cea8bb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8091
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank