Protein

View in Explore
Genbank accession
WMI32677.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETSKVNDSDYLVLDQPDKTVKSTVSNFLTDTGVVLATQLKDTDGADLIQSSNGNTVQEELNNNLLNDREQWRRSLAEAGLTLVDGSFEEGATVGSVTDAVWYIAGAQCYTWGSGFPKDVPPKSTPTSTGGVGVGAWISVGDASLRSQLHSPSLPGTSLIKHSDGKTVQQELNSILSVHSRVFSVDDPQFAGGAKGDSNGTAGNGTDDTAAIYACFQAAIAAGGGKIVFSPGKIYRTTYTVLYGSNMVIDMQGASIFFDVKPNDGSVFMPDSFQSYTKFTTDVIFMNGQINGRTGAGNGIGANRARRLTLFNIGSKYLHWHLFDGAGAQQVKIINCWCEGTNSTPFQVDNATYDKASWGIDASGNVLPISFDATGVGGWSNCRDVLIMGCTVRNALYSCVHIHNTNNQNIQVINCHFENSKAGVFADNNATFITTNTLIQGCTFIRCTNPISWSGGFNVLRILDNNFYGENNTTWYYGIRILLAAAGTLKTLAIKGNTFTGLYRPIIVNGVLGFAVDDNVFQTCGGTTPPSSGGVITAENPLSIVRLSGCKSGTAANNVFQDCNDPVCISVARDQVDSSYSSSVEVNGNISRASGCLLSLHYADRCTARDNKYIGLATDFYGIYVGETSLACVIDGFYCSQGSGQAVHVNGGPRHVVRDVVAFGTDTTKAAIVFHNTNTARSMDNVVMGGYLSSGYILLSGTTVNYVGDEPNMTIAKQDTATGVKVVYTKAAVQN
Physico‐chemical
properties
protein length:743 AA
molecular weight: 79021,26310 Da
isoelectric point:5,40064
aromaticity:0,08883
hydropathy:-0,09112

Domains

Domains [InterPro]
DC_0369
STR
1–742
DC_0369
G3DSA:2.10.10.80
ATT
89–159
G3DSA:2.10.10.80 IPR012334 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR040775
RBD
93–150
IPR040775 IPR011050
IPR006626
Unmapped
390–412
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR011050
STR
502–713
IPR011050
WMI32677.1
1 743
Architecture
STR
ATT
STR
STR 1-88 | ATT 89-159 | STR 160-742 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMI32677.1
1 743
Domain Start End Length (AA) Confidence
N-terminal 1 203 203 0,9925
Central domain 204 720 518 0,9895
C-terminal 721 743 22 0,9125
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-203
Central
204-720
C-terminal
721-743

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage iGC_PHA_EC001
[NCBI] 		3049681 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMI32677.1 [NCBI]
Genbank nucleotide accession
OR437326.1 [NCBI]
CDS location
range 62647 -> 64878
strand +
CDS
ATGTCAACTACAATTACTAATTTACCCGAAACATCAAAAGTTAATGATTCTGATTACCTGGTTTTAGACCAACCTGATAAGACTGTTAAAAGCACAGTTTCCAACTTTCTTACTGACACTGGGGTGGTTTTAGCCACCCAGTTGAAAGATACAGATGGAGCAGATTTAATACAATCCTCAAATGGTAATACTGTTCAGGAAGAGTTGAATAACAATCTTCTTAATGATCGTGAACAGTGGCGTCGTAGTCTTGCCGAGGCTGGGTTAACTCTTGTTGATGGTAGTTTTGAAGAAGGGGCTACAGTGGGCAGTGTAACTGATGCTGTCTGGTACATAGCGGGTGCTCAGTGCTACACATGGGGGTCTGGTTTCCCTAAAGATGTACCACCTAAATCAACCCCGACATCAACCGGTGGAGTAGGTGTAGGGGCGTGGATATCAGTTGGGGATGCATCGCTGCGCAGCCAGCTACACAGCCCATCGCTACCAGGAACATCGCTAATCAAACACTCTGACGGCAAGACTGTTCAGCAGGAACTCAACAGCATTCTTTCCGTCCATTCGCGCGTTTTCAGCGTTGATGACCCGCAGTTTGCTGGCGGTGCAAAAGGTGACAGCAACGGCACGGCAGGTAATGGTACAGACGATACGGCAGCTATTTATGCTTGCTTCCAGGCTGCAATTGCTGCTGGTGGTGGGAAGATTGTCTTCTCCCCTGGTAAGATATATCGGACGACATACACCGTCTTATACGGCAGCAACATGGTTATCGATATGCAGGGAGCGTCAATTTTCTTTGATGTCAAGCCGAATGACGGCTCTGTGTTCATGCCAGACTCCTTCCAGTCTTACACCAAATTCACGACCGATGTGATTTTTATGAACGGCCAGATTAACGGCAGAACCGGTGCCGGTAACGGTATCGGTGCTAACCGTGCTCGCCGCCTCACATTGTTTAACATTGGTAGTAAATATCTACATTGGCACCTGTTTGACGGTGCTGGCGCACAGCAGGTTAAAATCATTAATTGCTGGTGTGAGGGGACTAACTCTACTCCTTTCCAGGTTGATAACGCCACTTATGATAAGGCATCGTGGGGTATAGACGCATCGGGAAATGTACTTCCCATATCATTCGACGCAACAGGGGTCGGAGGATGGTCTAACTGTCGTGACGTGCTGATTATGGGATGCACTGTAAGGAATGCCCTTTATTCATGTGTGCATATTCATAATACCAATAACCAAAATATTCAGGTTATTAACTGTCATTTTGAAAATTCTAAGGCAGGTGTCTTTGCAGATAACAACGCAACATTTATAACCACTAATACATTAATTCAGGGGTGTACCTTCATAAGATGTACTAATCCTATCAGTTGGAGTGGTGGTTTTAATGTACTGCGTATTCTGGATAACAACTTCTACGGGGAAAACAATACTACCTGGTATTACGGTATTCGCATCCTCTTAGCTGCTGCCGGTACTTTGAAAACACTAGCAATTAAAGGTAATACCTTCACTGGATTGTACCGACCTATCATCGTTAATGGTGTACTTGGGTTTGCGGTTGACGATAACGTATTTCAAACATGTGGCGGGACAACACCACCTTCGTCAGGCGGTGTCATTACCGCTGAAAACCCGTTGTCCATAGTTCGTCTGTCCGGGTGCAAAAGTGGCACAGCAGCAAATAACGTGTTCCAGGATTGCAATGACCCAGTATGTATATCTGTGGCAAGGGACCAAGTAGATTCGTCATACTCTTCGTCTGTAGAAGTTAATGGGAACATCTCCCGTGCTTCTGGATGCTTGTTGTCGCTACACTATGCGGACCGTTGCACGGCAAGAGACAACAAATACATTGGCTTGGCAACAGACTTCTACGGCATCTACGTTGGTGAGACATCCTTAGCTTGTGTTATTGATGGGTTCTATTGCTCGCAGGGTAGCGGTCAGGCTGTGCATGTCAATGGTGGCCCCCGTCACGTAGTCCGAGATGTTGTGGCTTTCGGGACTGACACCACAAAGGCAGCAATTGTCTTCCACAACACCAACACTGCAAGGTCTATGGACAATGTGGTAATGGGGGGTTACTTGTCTTCTGGATACATCTTGTTATCCGGTACTACCGTGAACTACGTTGGTGATGAACCAAACATGACTATTGCCAAGCAAGATACGGCAACAGGCGTGAAGGTTGTCTACACGAAAGCGGCAGTGCAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b3dc18185ca39ae672f81f8ee2d55b51b55c654bb7b647e8764539fbd3029494
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7830
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Escherichia phage iGC_PHA_EC001 Khan,T., Haider,A., Rahman,S., Moon,S.B., Mahmud,I., Mondal,S.I., Begum,A., Biswas,S.K., Jubair,M. and Rahman,M. — — GenBank