Protein

View in Explore
Genbank accession
AGG54640.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAIHAPSAHNIVQSVKFTLPQYSVYLPAYGNNNSNYRQWSNVTVSITPKFANSHIIIWQKCEIQGNSSHGYLTWKRGGTSGTWLHTDTSAGGASGSDGLYVNHDNEHDNYESSVVIFEDSDPGYTLGNSITYVPYIAFWAADTFWAGSYQNNGNGQVNQGYHGYLQEIAYT
Physico‐chemical
properties
protein length:171 AA
molecular weight: 18956,35170 Da
isoelectric point:5,62714
aromaticity:0,14620
hydropathy:-0,49357

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54640.1
1 171
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0026
Central domain 11 160 151 0,0004
C-terminal 161 171 10 0,9981
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-160
C-terminal
161-171

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-GSP1
[NCBI] 		382262 Uroviricota > Caudoviricetes > Autographivirales > Lingvirus PGSP1 >
Host Prochlorococcus marinus subsp. pastoris str. CCMP1986
[NCBI] 		59919 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54640.1 [NCBI]
Genbank nucleotide accession
HQ332140.1 [NCBI]
CDS location
range 24398 -> 24913
strand -
CDS
ATGGCTATACATGCACCTTCTGCTCATAACATTGTACAAAGTGTAAAGTTTACTTTACCTCAGTATTCTGTGTACTTACCTGCATATGGTAACAATAACAGTAATTATAGACAGTGGTCTAATGTTACTGTAAGTATCACTCCTAAATTTGCTAATAGTCATATAATTATTTGGCAAAAGTGCGAGATTCAAGGTAACTCATCTCACGGTTATTTAACTTGGAAGCGTGGAGGCACAAGTGGTACATGGTTACACACAGACACAAGTGCGGGTGGAGCATCAGGTAGTGATGGTCTTTACGTAAACCATGATAATGAGCATGATAACTATGAATCATCAGTTGTCATATTTGAAGATTCAGATCCGGGTTATACTCTTGGAAACTCGATTACATATGTACCTTACATAGCTTTTTGGGCTGCTGATACATTTTGGGCTGGAAGTTATCAAAACAACGGTAACGGACAAGTTAACCAAGGTTATCATGGTTACTTACAGGAGATAGCATACACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0acd6cafd3337065319b88357dd030e32e4277fea2e92be1c0344765443f3107
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7045
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-GSP1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank