Protein

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Genbank accession
YP_007674603.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSQTNAQLLADSLGTASTGTIPIGGIILWSGSTGSIPDGWALCNGSNGTPNLQDRFVVGAGNNYAVDATGGSANAVLIAHNHTYTNRTNAQGQNNVTGGPSPINDGALPNQPTSTTGINAAGSSSNTQTGTNANLPPYYSLAYIMRTS
Physico‐chemical
properties
protein length:148 AA
molecular weight: 14912,02200 Da
isoelectric point:5,23853
aromaticity:0,05405
hydropathy:-0,28919

Domains

Domains [InterPro]
cd22641
STR
2–147
cd22641
DC_2164
STR
2–148
DC_2164
SSF88874
STR
18–146
SSF88874
YP_007674603.1
1 148
Architecture
STR
STR 2-148
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007674603.1
1 148
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,9108
Central domain 14 137 125 0,0016
C-terminal 138 148 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-137
C-terminal
138-148

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SKS1
[NCBI] 		754042 Uroviricota > Caudoviricetes > Llyrvirus >
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007674603.1 [NCBI]
Genbank nucleotide accession
NC_020851 [NCBI]
CDS location
range 171545 -> 171991
strand -
CDS
ATGTCACAAACAAACGCACAATTACTTGCTGATTCATTAGGAACCGCATCGACTGGAACTATTCCAATTGGAGGTATTATTCTATGGTCGGGATCTACTGGATCTATTCCTGATGGATGGGCATTATGTAATGGATCTAATGGAACTCCAAATTTACAAGATAGGTTTGTAGTTGGTGCCGGAAATAATTATGCTGTTGATGCTACTGGTGGTAGTGCTAATGCTGTTCTGATTGCTCATAACCATACTTATACAAATAGGACAAATGCTCAAGGACAAAATAATGTAACCGGAGGTCCTAGTCCGATTAATGATGGAGCTTTGCCTAATCAACCAACATCAACTACCGGCATCAATGCGGCAGGAAGTTCTTCAAATACACAAACAGGAACCAATGCAAACCTACCCCCATATTACTCTCTTGCTTATATTATGAGAACTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c0b25e213e115f0ed235ed0d252b97347bda46af9fc00b593524cfd194f2d69
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7082
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-SKS1 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank