Protein

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Genbank accession
YP_010077802.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,59
Protein sequence
MSSTNQIPYAFAGTKTKMPYLGSGYIAGEAPPPLVPDHPDGRTYVDYQIKPLVVKVLHADSFTPISEVKSLPDGTWRIEGLDPAQRYQVIFQNDTYRDSSNTLYNSFIQDWITAVPMPYVAPADELLMAVPLVMERWAMPSTIQAWSVNGGVLTTPTFSGSFTGVTVETNKTSVNVRLVPVQQIGTYTLQVSAIKDTNTITTGLRSFRIRPQQVDTQQFIRFALLGTTPGPASAISTWNRALNNNGTLTNGTFTADADALSPDYPVSLNSNWSADIISGGMFNDGAGNWISLNNGYNNGVTVEGWFNVSTWPTTDSAMLTSIQTSNAASSLIGLTLLPSKRIGTIMKYGSTNSARFENVGEADYTLPTGEWFHVLVHIPPSQADGYLYINGQYVDKWSMIKRNTVPTNTNLTIGYVTFMCNNGQGCTGTAVAKCNRVVWLESRFSNQNFTPSKNKYHEYQATVHCATYGVNGKTVNEMSSCDGTWNTTGNTNSRPVFDPVEGVVFPNTTATDGYAWINIQRGYGGVKGSFCLDVWFKPLTAYNGDKNIIQLGNAGSSDGRMHIALNNGKLKSFCAPYTAATGVTMNGTTVLNNNQWYLATLCCDVIQREWRLYLDGTLEASIADPTLAPLALPATSSLIQIILGGRHPLSTASGTIPSFHGVIGATRLTVNGPRYYSGFTPTGIGAWDALPARPAA
Physico‐chemical
properties
protein length:696 AA
molecular weight: 75490,06690 Da
isoelectric point:6,51161
aromaticity:0,10201
hydropathy:-0,17011

Domains

Domains [InterPro]
DC_0739
ATT
1–245
DC_0739 IPR013320 G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
235–433
G3DSA:2.60.120.200 IPR013320
PF13385
LEC
285–415
PF13385 IPR013320
PF13385
LEC
527–637
PF13385
YP_010077802.1
1 696
Architecture
ATT
STR
STR
ATT 1-245 | STR 246-433 | STR 463-670 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010077802.1
1 696
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9300
Central domain 15 237 224 0,1956
C-terminal 238 696 458 0,7268
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-237
C-terminal
238-696

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage IME-SM1
[NCBI] 		1654717 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas sp.
[NCBI] 		69392 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010077802.1 [NCBI]
Genbank nucleotide accession
NC_054952 [NCBI]
CDS location
range 47072 -> 49162
strand +
CDS
GTGAGTAGCACAAATCAAATCCCATACGCTTTCGCCGGTACAAAGACGAAGATGCCCTATCTTGGTTCCGGCTATATCGCTGGCGAAGCGCCGCCTCCACTTGTTCCAGATCATCCGGACGGTAGAACCTATGTCGACTACCAGATCAAGCCTCTGGTTGTCAAGGTATTGCATGCAGACTCGTTCACCCCAATCTCTGAGGTGAAGTCTCTGCCGGATGGCACATGGCGCATTGAGGGCTTGGACCCAGCCCAGCGATATCAGGTGATCTTCCAGAACGACACCTACAGAGATAGCAGCAACACGCTATACAACTCCTTCATCCAGGATTGGATCACGGCTGTCCCTATGCCCTATGTAGCTCCAGCCGATGAGCTGCTGATGGCTGTGCCTCTCGTCATGGAAAGATGGGCTATGCCGTCTACGATTCAGGCTTGGTCTGTCAATGGTGGCGTCTTGACGACTCCCACCTTCTCCGGGTCATTCACTGGAGTTACAGTCGAAACCAACAAGACTAGCGTGAATGTGCGGCTAGTGCCTGTGCAACAGATCGGCACGTACACCTTGCAGGTGTCGGCTATTAAAGACACAAACACTATCACGACCGGCTTGAGATCCTTCAGAATCCGACCGCAGCAGGTAGACACACAGCAGTTCATCCGCTTTGCTTTGCTTGGTACAACGCCAGGCCCGGCTAGCGCTATTTCCACTTGGAATCGTGCGTTGAACAACAATGGCACCTTGACAAACGGAACGTTCACTGCAGATGCGGACGCGCTATCGCCAGACTATCCTGTGTCTCTGAACAGCAACTGGTCAGCTGATATCATCTCTGGTGGTATGTTCAATGATGGTGCAGGTAACTGGATCTCTCTGAACAACGGCTACAACAATGGAGTCACGGTCGAGGGTTGGTTCAATGTGTCGACTTGGCCCACTACCGATTCAGCTATGCTGACGTCGATCCAGACATCCAATGCTGCATCATCGCTTATCGGCTTGACCCTTTTGCCATCCAAGAGGATTGGCACAATCATGAAGTATGGCTCGACCAACTCGGCTAGGTTCGAGAATGTAGGTGAAGCCGACTACACGTTGCCGACTGGCGAGTGGTTCCATGTGTTGGTCCACATTCCTCCCAGTCAAGCTGACGGCTATCTGTACATCAACGGGCAGTATGTGGATAAGTGGTCGATGATCAAGAGGAACACAGTTCCTACCAACACAAACCTGACCATCGGCTATGTCACCTTCATGTGCAACAATGGTCAGGGCTGCACAGGAACAGCTGTGGCCAAGTGTAACAGGGTTGTGTGGCTTGAGAGTCGCTTCTCTAACCAGAACTTCACTCCGTCAAAGAACAAGTATCACGAGTATCAAGCCACCGTCCATTGTGCCACCTATGGGGTCAACGGCAAAACTGTGAATGAGATGAGCTCTTGCGATGGCACATGGAACACGACAGGTAACACAAACTCGAGGCCTGTGTTCGATCCAGTCGAGGGTGTGGTCTTCCCGAACACAACAGCGACAGATGGATATGCCTGGATCAACATTCAGCGAGGATATGGCGGTGTCAAGGGTTCGTTCTGTCTGGATGTGTGGTTCAAGCCACTGACGGCATATAATGGCGACAAGAACATCATTCAGCTCGGCAACGCGGGCTCATCTGATGGACGCATGCACATCGCCCTGAACAATGGTAAGCTGAAGTCGTTCTGTGCGCCATACACAGCTGCGACGGGTGTCACCATGAACGGGACGACGGTGCTTAACAACAACCAATGGTATCTAGCCACCTTGTGCTGCGATGTGATCCAGCGCGAGTGGAGACTCTATCTGGATGGTACGCTTGAGGCTAGCATCGCTGACCCCACGCTTGCACCGTTGGCATTGCCGGCTACCTCGTCTCTGATCCAGATCATCTTGGGCGGTCGGCATCCACTGAGTACTGCAAGTGGTACGATTCCGTCATTCCATGGCGTCATCGGTGCAACACGATTGACTGTCAATGGACCTCGCTACTACTCCGGCTTTACGCCTACCGGCATCGGCGCATGGGATGCACTGCCAGCTCGCCCAGCGGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2fe7acb28780b38a8ad941388327cb3d25eb458167980c7ce1a9718810dbd60e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6087
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50