Protein

View in Explore
Genbank accession
XQW40797.1 [GenBank]
Protein name
baseplate
RBP type
TF
Evidence RBPdetect2
Probability 0,67
Protein sequence
MAIETNAVVITDLNPLYPRDRDYIYEGAAQIRLIKQTLQNTFPNVTEPVDIDSDTFKIMSEKLKFTGDSMDVGGLMIKNVTPGTGDKDVVTKGQMEAFMKNWMENKLYRIGSYYITEEDINPGDSISLGFGSWAKVTGVIMGTGVVNPDGSVPNAQRVEFQAGGTGGRVFNTIRTENVPLMTVNGSSFSLSSNTHSHNMVFGRGDASGHNSSPNWYSPGGGYSQRTDNDTHTHTISGSVSLGRDDISRQPINTLPPFRAAHIWRRIS
Physico‐chemical
properties
protein length:267 AA
molecular weight: 29244,31890 Da
isoelectric point:5,85938
aromaticity:0,08240
hydropathy:-0,44532

Domains

Domains [InterPro]
DC_0570
ATT
1–70
DC_0570 DC_0154
IPR053827
ATT
105–266
IPR053827
XQW40797.1
1 267
Architecture
ATT
STR
ATT
ATT 1-70 | STR 71-104 | ATT 105-266 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage YW01
[NCBI] 		3414236 Viruses >
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQW40797.1 [NCBI]
Genbank nucleotide accession
PV018828 [NCBI]
CDS location
range 15152 -> 15955
strand +
CDS
TTGGCTATCGAAACTAATGCGGTAGTTATTACCGACTTAAACCCACTCTATCCTAGAGACAGGGATTACATATACGAAGGGGCGGCTCAAATCCGCCTCATTAAACAAACGTTACAGAACACATTCCCCAATGTTACAGAGCCAGTTGATATAGATTCTGACACCTTTAAGATTATGTCAGAGAAGCTCAAGTTTACTGGTGATTCAATGGATGTTGGTGGTCTTATGATCAAGAACGTTACTCCGGGAACTGGTGACAAGGATGTTGTTACTAAAGGCCAGATGGAAGCGTTCATGAAGAACTGGATGGAGAATAAGCTCTATCGAATTGGTTCTTACTACATCACTGAAGAAGATATTAACCCCGGTGATTCCATCTCCTTAGGGTTTGGCTCTTGGGCTAAAGTGACTGGTGTTATCATGGGTACTGGTGTAGTAAACCCTGATGGTTCTGTCCCTAATGCTCAGAGAGTTGAGTTCCAAGCAGGTGGTACTGGTGGTCGTGTCTTCAATACTATTCGAACTGAGAACGTACCTTTGATGACAGTTAATGGCTCCAGCTTCTCTCTATCCAGTAATACTCACAGTCACAACATGGTATTTGGTCGTGGAGATGCTAGTGGTCATAACAGCTCGCCAAACTGGTATAGTCCGGGTGGTGGATACAGTCAGAGAACTGATAATGATACTCACACTCATACAATCTCTGGTAGTGTAAGTCTTGGTCGTGATGATATCTCTCGTCAACCTATTAACACTTTGCCACCATTCAGAGCAGCTCACATTTGGAGACGTATTAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b397e76d9d4c41ff73256a630b50cb909faa67c756821fcd366452d3e7f15eff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7086
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of three Escherichia coli Bacteriophages Isolated from Activated Sludge in Domestic Wastewater Treatment Plants Nittami,T., Fujii,Y., Wein,Y., Motoyama,K., Sasaki,M. and Batinovic,S. 2025-09-11 — GenBank