Protein

View in Explore
Genbank accession
XWX33240.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MARQFDIGRDEIVLHLRDGKYITGFTTAGAYDTDFGQIKVNREILPAYFFDNFAYERYLYYSKPEEVIENKNYVPPQINNGDEESQQDTVPKEQYDSLKAELEIMRQQQEAMMKMLQQLLGQKG
Physico‐chemical
properties
protein length:124 AA
molecular weight: 14558,16670 Da
isoelectric point:4,69760
aromaticity:0,12097
hydropathy:-0,77903

Domains

Domains [InterPro]
DC_0295
STR
4–124
DC_0295
IPR021358
STR
17–77
IPR021358 Coil
XWX33240.1
1 124
Architecture
STR
STR 4-124
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_38
[NCBI] 		2815626 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX33240.1 [NCBI]
Genbank nucleotide accession
MZ417332.1 [NCBI]
CDS location
range 110591 -> 110965
strand +
CDS
ATGGCTAGACAATTTGATATTGGTAGGGATGAAATAGTATTACATCTAAGAGACGGTAAATATATTACAGGATTCACAACAGCAGGGGCTTATGATACAGATTTCGGGCAGATAAAAGTTAATAGAGAAATTTTACCTGCTTATTTCTTTGATAATTTTGCCTATGAAAGATACTTGTATTATAGTAAACCTGAAGAGGTTATAGAAAATAAAAACTATGTACCACCTCAAATCAATAATGGTGACGAGGAATCTCAACAAGATACTGTACCTAAAGAACAATACGATAGCTTAAAAGCAGAGTTAGAGATTATGAGACAACAACAAGAAGCTATGATGAAAATGCTTCAACAACTTTTAGGTCAAAAGGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
118be83f0745c71561dda9533fc2d85e30d79a37aa9a7810f8b9dc331c897f1d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8630
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank