Protein

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UniProt accession
A0A173GD14 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,73
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSDRTYYATNIFDADGVKTAWPFSFAGVAPDDHSGTTPYLYPEDVKALELYFDVNGDAAQAVRSVQLLQPNVATIVGPPVAKGRRVKIYRQTELRFPLVDYRDKQTVSEYDLDLANRQAVFIAQETLDASLDNFGRDAQDNYDAKGKRIVNLGDGRADQDAVNVRQVLAWQTTYELNWRFLRPSRGPTLPVVRDNGEPLREGDWWMDINNGVTYNNHNGIWSPQNLDMIALGRPNGSAVIGNNAQCVLNVTELKKLSRLAQSTTAFVMGEVEVGDGGGGMYQLVATGTPDGVNIIQANDGGLWKLAKTRASNIAGITLSVDNIAALKAINKNSPADTAHVAGYYTPGDGGGGTYKRTATGTPNNGSIVQATDGGLWKLSWQGELSVKQFGAKGDGVTNDTVAIQTASNVLGPGNLKFPPGTYMASTLSIPRSQVFTGEGPTASSIKQIAGTNKDFVTSENFAALLNSGLSTFTSPLCPSWMGLRNISVDGNRAGNSAGWACRLYGAYIVLENATVMFGGAGGLHTQYTTTIGTGGNARLIDQEEGYARNLIVRDNNGDGWLNEGPHNIHIDNLIAMRNEGYGYDMPKRVAGISNGAPTYVTIIHGFQNDMSWTPAMGRLRKNIRLGTNGSYGQITVDGGSLEMEADSTLIGNLNHYFGGQGGDGVVISGSRNTISTYRGLWRGQDASVIPDSWLLHLKGDFNSIGVMHLLDNNTPVKTFGNGLLVTGHGNAIADAFIRGGKIGASIQGSRTRLSGRIQNTTVAGLQYIKNPTANTGRNKLNLQIDPVSGVYVTGDRPAPLSDKFSIQASGLGPDAATEVSFEVNDLPGTAHKPGLKTFTFPHRLLYTPRTTDVILTLRSLNPLYLDIGSWRVTSTDGANVTVQYNIRSEGFDDSYVGFIVNIAIS
Physico‐chemical
properties
protein length:905 AA
molecular weight: 97173,46490 Da
isoelectric point:6,15461
aromaticity:0,08287
hydropathy:-0,28785

Domains

Domains [InterPro]
DC_1263
ATT
1–165
DC_1263 DC_1917 IPR011050
DC_0282
STR
305–904
DC_0282
IPR012334
STR
383–794
IPR012334
IPR024535
ENZ
385–572
IPR024535
A0A173GD14
1 905
Architecture
ATT
ATT
STR
ATT 1-165 | ATT 198-314 | STR 315-904 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A173GD14
1 905
Domain Start End Length (AA) Confidence
N-terminal 1 399 399 0,9963
Central domain 400 806 408 0,9892
C-terminal 807 905 98 0,9785
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-399
Central
400-806
C-terminal
807-905

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage VSW-3
[NCBI] 		1852562 Uroviricota > Caudoviricetes > Autographivirales > Napahaivirus > Napahaivirus VSW3
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
d02ce999add0a8c0801642803cb0de6d433fee217836ad474cdc4cfa9f9c7334
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7731
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50