Protein

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Genbank accession
YP_004301433.1 [GenBank]
Protein name
tail protein with lysin activity
RBP type
TSP
Evidence RBPdetect
Probability 0,79
Protein sequence
MQEDNHLRAPVAEITFRTTENTFTLKHTLGKGAYTAQETKNATGTTDANISNALISFATQNDTNADSATFSLVLAGTVRWDERLQPNDVVNIKVHNSVSDVSNPVIMVGLISEVKEIATFSDDSIVYQINGLSMMKAIMQQKLGTLQEISGVLSASTGWFTTIIDNGIVFNGKKASEVVKQVIDYFAFTYTDYKVGKDKRALKDLIEYDLKSHEDEYLTDATPYVSFEGSLRQLITDAQAKPFNEFYHDFTPKGTCKLYMRPTPFEKPNWEVLDTYKINAKNIIEKNLMRTDAEAYSIFSVSIPSNVIFSGTTLGNKPQYAEELTGKYGYSMLQVENRYIFQTKDATTETGTSDSSITTDYASISSADVDQIRKATLAWTDRQGVTAENLKKYIGTVRKDSPFYKHPEYLIKAGEKSGLNPVYILAHASIESAWGTSAYARAGNFFGIGAFDTNPDNAYKYGNSDMESGLINGAVWIRKNFFDVGQETLYTMRHNKGSHEYATDPVWDKSIATLMAQYYSLFPPSKDSGKATRATAKETTEEEVDENAPVNEDDIQQDVADGNKERLGKYSKYLFNWYADNPSYYSGDFRVMGNPEYRVGGRLQWYDEITDNAWEYYIESVAHDFSFDAGYSTILGVTRGLPMSKDRFEHHYKSKDFTGGLFGEADINELYASVGKGKPEDEPGGEPNPGGELGGSINGDGASIIALCKKYITRTTKYVLGGGHSSDPFKAPNLVTIEIDCSAFTGWVYYHAGVKGWTEGDAVSTTWGQVATSKLITVAKLDGGSSSTTSAKNGTLAKASLGDIIFFDTGGRDSHVGIYAGKDDKGVHYFYGSNGNGNASDTTTNSGIQLKPITSAYWMGVYNGTVRRPRNK
Physico‐chemical
properties
protein length:872 AA
molecular weight: 96240,71520 Da
isoelectric point:5,28167
aromaticity:0,11353
hydropathy:-0,48647

Domains

Domains [InterPro]
DC_0587
STR
1–667
DC_0587 G3DSA:3.90.1720.10
IPR051056
Unmapped
383–551
IPR051056 IPR000064
IPR002901
ENZ
400–523
IPR002901 IPR038765
G3DSA:1.10.530.10
RBD
403–521
G3DSA:1.10.530.10 IPR000064
IPR002901
ENZ
409–519
IPR002901
YP_004301433.1
1 872
Architecture
STR
RBD
STR
STR 1-667 | RBD 668-698 | STR 699-869 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004301433.1
1 872
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9419
Central domain 17 215 200 0,4334
C-terminal 216 872 656 0,2643
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-215
C-terminal
216-872

Taxonomy

  Name Taxonomy ID Lineage
Phage Brochothrix phage A9
[NCBI] 		857312 Uroviricota > Caudoviricetes > Herelleviridae > Klumppvirus A9 >
Host Brochothrix thermosphacta
[NCBI] 		2756 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004301433.1 [NCBI]
Genbank nucleotide accession
NC_015253 [NCBI]
CDS location
range 52715 -> 55333
strand +
CDS
ATGCAAGAAGATAATCACTTACGTGCCCCAGTTGCGGAGATAACTTTCCGCACAACGGAGAACACGTTCACATTAAAGCACACGCTAGGAAAAGGTGCATACACAGCACAAGAGACAAAGAACGCAACGGGAACGACAGACGCAAACATCTCTAACGCACTTATTAGCTTTGCCACACAAAATGACACTAATGCAGACTCAGCAACGTTCAGCCTTGTATTAGCAGGTACGGTACGGTGGGACGAAAGATTACAACCAAACGATGTCGTAAATATCAAAGTGCACAACTCGGTATCAGATGTATCAAACCCTGTCATCATGGTAGGGCTAATATCAGAGGTAAAAGAGATTGCTACCTTCTCGGATGATAGTATTGTTTATCAAATAAACGGGCTGTCTATGATGAAAGCCATCATGCAACAAAAACTAGGAACACTACAAGAGATATCGGGTGTACTATCCGCATCTACTGGGTGGTTTACTACGATTATTGATAATGGTATTGTGTTTAATGGTAAAAAGGCATCAGAGGTCGTTAAACAAGTTATAGACTACTTTGCGTTTACGTACACTGACTACAAAGTAGGTAAGGACAAGCGGGCACTTAAGGACCTTATCGAGTACGACTTAAAGAGTCACGAGGACGAATACTTGACAGATGCCACACCTTATGTTAGCTTTGAAGGAAGTTTAAGACAGTTAATAACGGATGCACAAGCAAAACCTTTTAACGAGTTCTATCACGACTTTACACCAAAAGGAACATGTAAGTTGTATATGCGACCTACACCTTTTGAGAAACCTAATTGGGAAGTTCTAGATACCTACAAAATTAATGCGAAGAACATCATTGAGAAGAACTTGATGCGTACAGATGCGGAAGCCTACTCAATATTCTCTGTAAGCATACCTTCAAACGTTATTTTTAGTGGGACAACGCTAGGTAACAAACCGCAATACGCAGAAGAACTAACAGGTAAATATGGTTATTCTATGTTACAAGTAGAGAACAGGTATATTTTCCAGACAAAGGACGCCACTACTGAAACAGGTACGTCTGACTCGTCAATCACCACAGACTATGCTTCGATATCATCTGCCGACGTGGACCAGATAAGAAAAGCAACACTTGCTTGGACAGACAGACAAGGAGTAACAGCAGAAAACCTTAAGAAGTATATAGGTACTGTTAGGAAAGATTCACCTTTCTACAAGCACCCAGAGTACTTGATTAAGGCAGGAGAGAAGAGCGGACTTAACCCTGTTTATATTCTTGCACATGCCAGCATAGAGTCAGCGTGGGGAACGTCTGCGTACGCAAGAGCAGGTAACTTTTTTGGTATCGGCGCCTTCGATACAAACCCAGATAACGCTTACAAGTATGGTAACTCTGATATGGAGAGTGGGTTGATTAACGGGGCGGTATGGATTCGTAAAAACTTCTTCGATGTAGGGCAAGAAACACTCTACACTATGAGACATAATAAGGGCTCACATGAGTACGCAACTGACCCTGTTTGGGATAAGAGTATTGCCACTTTAATGGCGCAGTATTACTCATTGTTCCCTCCAAGCAAAGATTCAGGTAAGGCAACACGAGCAACCGCTAAAGAGACTACCGAAGAGGAAGTGGACGAAAACGCACCCGTGAACGAAGACGATATTCAGCAAGACGTAGCAGACGGAAACAAGGAGCGCTTAGGCAAATACTCTAAGTACTTATTTAACTGGTACGCTGATAATCCAAGCTATTACTCAGGAGATTTCCGAGTGATGGGAAACCCTGAGTATAGAGTAGGAGGACGCCTACAGTGGTATGATGAGATAACAGATAATGCTTGGGAATATTACATCGAATCAGTAGCGCATGACTTTAGCTTTGATGCAGGGTACTCAACTATTCTAGGGGTTACACGAGGGTTGCCAATGTCCAAAGATAGATTCGAGCACCACTATAAAAGCAAAGATTTCACAGGTGGTCTGTTTGGAGAAGCTGACATCAATGAGCTATACGCTTCTGTTGGTAAAGGTAAACCAGAAGACGAACCCGGAGGAGAACCTAACCCGGGTGGTGAGCTAGGTGGAAGTATTAACGGAGACGGGGCGTCTATCATCGCTCTATGTAAGAAATATATTACAAGGACTACCAAGTACGTCTTAGGGGGAGGACATTCATCTGACCCGTTTAAGGCACCTAATCTAGTAACTATAGAGATTGATTGCTCGGCGTTTACCGGTTGGGTATACTACCACGCAGGAGTCAAGGGTTGGACTGAGGGCGACGCTGTAAGCACGACATGGGGGCAAGTAGCAACTAGCAAGTTAATAACAGTAGCCAAGCTAGACGGAGGCTCCTCATCAACCACATCTGCCAAAAACGGAACCTTAGCCAAAGCATCTCTAGGTGACATTATCTTCTTCGATACAGGAGGAAGAGATTCGCATGTAGGTATTTACGCAGGTAAGGACGATAAAGGCGTACACTACTTCTATGGAAGTAACGGTAATGGAAACGCAAGCGACACAACAACTAACTCAGGTATACAGCTAAAACCAATCACCAGCGCTTACTGGATGGGTGTATATAACGGAACAGTAAGAAGACCTAGAAACAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
774cff774a7c7a26f2cf656da11d6d41c10e71790cee659c9b235cfe79b4fae3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3028
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of three heterogeneous Brochothrix thermosphacta bacteriophages Kilcher,S., Loessner,M.J. and Klumpp,J. 2010-10-15 — GenBank