Protein

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Genbank accession
XYH49511.1 [GenBank]
Protein name
putative spike protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MSVLAFQKLSGDLSTDGKILLELQKLNQKNGLPDLYYFFDKLYPNREPFLIERSFNSGEPDGWFPRYWNNDPNDEKPFGGSFWGYWNLTAFSGGENEDRDDASLVNSDGQLVCYVSNRENHASYMGEATKMKRHGGYINVNAHFLGFAVIDQFAYNTKGFNGNVQIEYDESPLEKGDISNGKSYVDWFEDSDLVVKSPYFFKVSGEGEPPRYPEKVGDLYQFSVTADIGQYYLIEVTDFPYFDILVDFPFNAEVQYSYAYEPPFIDFNTVQNKKASVQITQLTGFKVRSLTRFDAVDSNDNNTYSAFVESTGFYEMNFGVQAHLDKTFILIRNHAE
Physico‐chemical
properties
protein length:336 AA
molecular weight: 38516,05470 Da
isoelectric point:4,57670
aromaticity:0,16667
hydropathy:-0,51905

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH49511.1
1 336
Domain Start End Length (AA) Confidence
N-terminal 1 32 32 0,9491
Central domain 33 322 291 0,8001
C-terminal 323 336 13 0,4958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-32
Central
33-322
C-terminal
323-336

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage FLiP-2
[NCBI] 		3416990 Viruses > Varidnaviria > Abadenavirae > Produgelaviricota > Ainoaviricetes
Host Flavobacterium sp.
[NCBI] 		239 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH49511.1 [NCBI]
Genbank nucleotide accession
PV425005 [NCBI]
CDS location
range 5772 -> 6782
strand +
CDS
ATGAGTGTATTGGCTTTTCAAAAACTGTCGGGAGATCTTTCGACCGATGGTAAAATTTTACTTGAGCTTCAGAAGCTTAACCAAAAAAATGGTTTGCCTGATTTGTATTATTTTTTCGATAAGCTTTATCCAAATAGAGAGCCTTTTCTTATAGAAAGGTCTTTTAATTCGGGTGAGCCTGACGGTTGGTTTCCCAGATATTGGAACAACGATCCTAACGATGAAAAGCCTTTTGGAGGTTCTTTTTGGGGTTATTGGAATTTAACCGCTTTCTCGGGTGGAGAAAATGAAGATAGGGATGATGCTTCTTTGGTTAATTCTGATGGACAGTTGGTTTGCTATGTTTCAAATAGGGAAAATCACGCCTCTTATATGGGCGAAGCTACAAAAATGAAAAGGCACGGCGGTTATATTAATGTTAACGCTCATTTTTTAGGTTTTGCCGTTATCGATCAGTTTGCATATAATACAAAAGGTTTTAACGGTAATGTTCAGATTGAATATGATGAATCTCCTTTGGAAAAAGGGGATATATCAAATGGCAAATCTTACGTAGATTGGTTTGAGGATTCTGATTTAGTTGTCAAATCTCCTTATTTCTTTAAGGTTAGCGGAGAGGGAGAACCTCCGCGTTATCCTGAGAAAGTAGGCGATCTTTATCAGTTTTCTGTTACCGCTGATATTGGGCAGTATTATTTAATTGAGGTTACTGATTTCCCTTATTTTGACATTTTGGTCGATTTCCCTTTTAATGCAGAGGTTCAATACTCCTATGCTTATGAACCTCCTTTTATAGATTTTAATACGGTTCAAAATAAAAAGGCTTCCGTTCAGATTACGCAATTAACAGGGTTTAAAGTAAGGTCTTTAACTCGTTTTGATGCTGTTGACAGTAACGACAATAACACTTATAGTGCTTTTGTTGAAAGTACAGGTTTTTACGAAATGAATTTTGGCGTTCAAGCTCATTTGGATAAAACATTTATATTAATTAGAAATCACGCAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
44db88377f9f7c54ee9381889b8e4954d7ffd3a86d831436e1c7151fcb98e2f8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3254
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
New Finnlakevirus isolate FLiP-2 provides insight into the ecology of ssDNA phages in Flavobacterium hosts Makela,K., Laanto,E., Penttinen,R., Ravantti,J., Kreuze,K. and Sundberg,L.-R. 2025 — GenBank