Protein

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Genbank accession
WPK33236.1 [GenBank]
Protein name
side tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,56
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MAIYRQGQASMDAQGYVTGYGTKWREQLTLIRPGATIFFLAQPLQAAVITEVISDTSIRAITTGGAVVQKTNYLILLHDSLTVDGLAQDVAETLRYYQGKESEFAGFIEIIKDFDWDKLQKIQEDVKTNADAAAASQQAAKTSENKAKTSETNAANSKKGADTAKAAAESARDAANTAKTGAEAAKSGAESARDAANTAKAGAESARDQAEEYAKQAAEPYKDLLQPLPDVWIPFNDSLDMITGFSPSYKKIVIGDDEITMPGDKIVNFKRASTATYINKSGVLTNAAIDEPRFEKDGLLIEGQRTNLLINSTNPSKWNKSSNMILDRSGVDDFGFQYAKFTLKPEMVGQTSAINIVTVSGSRGFDVTGNEKYVTISCRAQSGTPNLRCRLRFENYDGSAYTFLGDAYVNLTDLSIEKTGVAANRITARAVKDEASKWIFLEATIKALDTENMIGGMIQYAPAKGVGTGADDYIYIATPQVEGGACASSFIITEETTVTRASDMVTLPMKNNLYNLPFTVLVEAHKNWSRTPNAAPRVFDTGGHQSGAAIILAFGSAEGDADGFPYCDIGKSNRRVNENAKLKKMIIGMRVKSDYNTCCVSNARISSETKTEWRYIVSTATIRIGGQTSTGERHLFGHVRNFRIWHKALTDHQLGEIV
Physico‐chemical
properties
protein length:658 AA
molecular weight: 71504,50550 Da
isoelectric point:6,10982
aromaticity:0,08055
hydropathy:-0,33891

Domains

Domains [InterPro]
DC_1059
STR
1–657
DC_1059
NF048003
Unmapped
300–501
NF048003
WPK33236.1
1 658
Architecture
STR
STR 1-657 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK33236.1
1 658
Domain Start End Length (AA) Confidence
N-terminal 1 487 487 0,4366
Central domain 488 647 161 0,4991
C-terminal 648 658 10 0,9966
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-487
Central
488-647
C-terminal
648-658

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV105
[NCBI] 		3077251 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK33236.1 [NCBI]
Genbank nucleotide accession
OR352936.1 [NCBI]
CDS location
range 46164 -> 48140
strand -
CDS
ATGGCGATTTACAGACAAGGCCAAGCGTCTATGGACGCGCAAGGTTATGTAACTGGTTACGGTACAAAATGGCGTGAGCAATTAACATTGATTCGCCCAGGCGCAACTATTTTCTTTCTTGCTCAACCTTTGCAAGCTGCTGTGATTACAGAAGTGATTAGCGATACAAGCATTCGCGCAATTACTACTGGCGGCGCTGTAGTCCAGAAGACAAATTACCTGATCTTGCTTCATGACTCGTTAACGGTTGACGGTCTTGCGCAAGACGTAGCGGAAACGCTGCGTTATTACCAGGGGAAGGAATCGGAGTTTGCTGGATTTATTGAGATCATCAAGGATTTTGATTGGGATAAGCTACAGAAGATCCAGGAAGACGTAAAGACAAATGCTGACGCAGCAGCAGCAAGCCAGCAGGCAGCTAAAACCAGCGAGAATAAAGCGAAGACAAGCGAAACAAATGCAGCGAATAGCAAGAAAGGTGCTGATACTGCAAAGGCTGCCGCTGAATCCGCGCGCGACGCTGCAAACACTGCAAAGACTGGCGCTGAAGCAGCAAAGTCTGGCGCTGAATCAGCGCGTGACGCTGCGAACACTGCAAAGGCAGGAGCTGAAAGTGCGCGAGATCAAGCGGAGGAATACGCAAAGCAGGCCGCAGAACCTTACAAAGATTTATTGCAACCGTTGCCGGACGTGTGGATACCGTTTAATGATTCCCTGGATATGATCACCGGATTCTCTCCGTCATATAAAAAGATTGTTATAGGTGACGATGAGATCACGATGCCAGGTGACAAGATTGTTAATTTTAAACGCGCATCAACCGCTACTTACATTAATAAGTCTGGGGTGCTTACTAATGCTGCTATTGATGAACCTAGATTTGAAAAGGATGGTCTGCTCATTGAGGGGCAAAGAACAAACCTTCTTATAAATAGTACCAATCCTTCAAAATGGAACAAGTCATCAAATATGATCTTAGATAGATCAGGTGTAGATGATTTCGGATTCCAGTACGCAAAATTTACATTAAAACCAGAAATGGTAGGACAAACTTCAGCGATTAACATAGTAACCGTTTCCGGCAGTAGAGGTTTTGATGTAACAGGAAATGAAAAGTATGTAACCATATCATGCAGGGCGCAAAGTGGGACTCCAAATTTAAGATGCCGATTACGATTTGAAAACTACGATGGATCTGCTTATACATTTTTGGGTGATGCTTACGTAAATCTGACAGATTTATCAATTGAAAAAACTGGCGTCGCTGCAAATCGTATTACTGCAAGGGCTGTTAAAGATGAAGCAAGCAAATGGATCTTTCTTGAGGCGACAATTAAGGCACTTGATACAGAAAATATGATAGGTGGAATGATTCAGTATGCCCCGGCAAAAGGAGTGGGCACTGGCGCGGATGATTATATTTATATTGCGACACCTCAAGTTGAAGGTGGGGCGTGCGCTTCATCCTTTATTATTACAGAAGAGACTACAGTAACACGGGCAAGCGATATGGTTACATTACCAATGAAAAACAACCTTTACAATTTGCCGTTTACAGTTCTTGTGGAGGCTCATAAAAACTGGAGTAGAACGCCAAATGCTGCACCTCGTGTTTTCGATACTGGAGGTCATCAATCTGGCGCGGCAATTATTCTTGCTTTCGGGTCTGCCGAAGGCGATGCTGATGGATTCCCTTATTGCGATATAGGTAAATCAAACAGAAGGGTTAACGAGAATGCGAAACTAAAAAAGATGATCATAGGAATGAGAGTAAAGAGTGATTACAATACTTGTTGTGTAAGTAATGCCAGAATATCAAGCGAAACAAAAACGGAATGGAGATATATAGTATCAACGGCTACTATAAGGATTGGCGGGCAAACAAGTACAGGCGAACGCCATCTTTTCGGGCACGTTAGAAACTTCCGTATATGGCACAAGGCACTAACAGATCATCAATTGGGGGAAATTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fc23c7fda27162d24437fcddb029b7f8a597acd724c600dbbf203e20df869ab3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8187
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank