Protein

View in Explore
Genbank accession
XYY22429.1 [GenBank]
Protein name
regulator of chromosome condensation RCC1 domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MADYLATYETPGTGAVMQVEVNFAGQRPDLPNDPAPYLDPANVKAMIVTEATSTTVEVVRDITITLVNSTTFRTDEIVPLGTILRVYRITDIEFPIVDFVSLQVVSEADLDLQARQTLYAVMESRDAATRAQVYANFAQSVSVEANASAKDAVEKAEAAVRTADAAALAATNAVQVANQANVKSDEALAAAEAAEEHATNVETLAQSAQDAAAAAQQEATDARLAAENAVNIANGVDGKADAALEAAQRADTNAAQALSVANGIAATAEAARITANEAKDAADNAVSVAGAVDAKAQTALDTASAANTSAQNAVIIAQAAVTSATNANGGVTAANGRIDVLADRVLALEQWRNVATATLLNHDTNITLNYNSIEALKLRAAALEGLNTPLVPSFVMECADNLALVIVNGNLWTSCGSAAVYPNIGAGRGASGQTGRYGLDNFQQVSIPSQSPVVQATSNGQNTYALLANGDLYVWGNNGYGQLGLGHANVVGTPTLSAQGVREIYGHYTNAAYSTAPSKMYIRKDDAIYSAGYNAYGQLGVGDATNRSTWTVTWVLAGAPVRKVFNLGADFGCGVILTADNRMFVCGRNLQGQLGTGNGSDVRNWTDVTAAWGGTAAVAQMTDASGGFGYSSNAGDGTCWLAMFSKNVGVRVCGANTYGILGNGNTTNTVVPFNTPLPSLPADWCVLGDQPGAIFILGQDKKVYSWGYCDSNGQLGRGLTTSNATPGALPLTNVAALLSRGQSQYGYGFVYAAFALLESGVVMGWGANGYGTQGAGDAGVTLVPRRLLLPNRDPDGSVLVPYRLFYQNGSQAAGGPSTVGLITASGYLYGWGHNGQQQLSGQGAANASELVPALLPVPWRKRT
Physico‐chemical
properties
protein length:863 AA
molecular weight: 89318,26310 Da
isoelectric point:4,67207
aromaticity:0,07068
hydropathy:-0,01066

Domains

Domains [InterPro]
DC_0245
STR
1–220
DC_0245 IPR009091 IPR009091
IPR005604
ATT
34–130
IPR005604 Coil Coil IPR009091 IPR009091
IPR009091
STR
427–615
IPR009091 IPR000408
IPR051553
Unmapped
428–675
IPR051553
PF13540
STR
453–482
PF13540 IPR000408
IPR000408
STR
453–466
IPR000408 IPR000408
XYY22429.1
1 863
Architecture
STR
ATT
STR
STR
STR 1-33 | ATT 34-130 | STR 131-220 | STR 349-862 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22429.1
1 863
Domain Start End Length (AA) Confidence
N-terminal 1 387 387 0,9882
Central domain 388 591 205 0,4784
C-terminal 592 863 271 0,6308
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-387
Central
388-591
C-terminal
592-863

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaP4
[NCBI] 		3446277 Viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22429.1 [NCBI]
Genbank nucleotide accession
PV763896 [NCBI]
CDS location
range 14859 -> 17450
strand +
CDS
ATGGCTGATTATCTCGCCACGTATGAAACACCCGGCACCGGGGCAGTGATGCAGGTGGAGGTAAACTTCGCCGGTCAACGACCAGATTTGCCGAATGACCCAGCTCCGTACCTTGACCCTGCAAACGTCAAGGCCATGATCGTGACCGAAGCCACCTCCACCACTGTGGAAGTTGTGCGCGACATCACCATCACCCTCGTGAACTCTACGACTTTCCGCACCGACGAGATCGTGCCGCTGGGCACAATCCTCCGCGTGTACCGCATCACCGACATCGAGTTCCCTATCGTGGACTTCGTGTCTCTGCAAGTGGTGTCCGAGGCTGACCTCGACCTGCAAGCACGCCAGACGCTGTATGCTGTCATGGAATCCCGTGACGCTGCAACCCGCGCTCAGGTTTACGCCAACTTCGCACAGTCCGTATCCGTTGAGGCCAATGCCTCGGCAAAGGACGCAGTGGAGAAAGCTGAGGCCGCTGTCCGCACTGCTGACGCTGCCGCTCTGGCCGCGACCAACGCTGTGCAGGTAGCGAACCAAGCCAACGTCAAGTCCGACGAGGCTCTGGCCGCTGCTGAGGCTGCTGAGGAACACGCTACCAACGTTGAGACGCTGGCACAATCCGCACAGGATGCTGCTGCTGCTGCACAACAGGAAGCAACCGACGCACGGCTAGCTGCTGAGAACGCTGTGAACATCGCCAACGGTGTTGACGGCAAGGCTGACGCTGCTCTGGAAGCCGCACAACGTGCTGACACCAACGCTGCACAGGCACTGTCCGTGGCAAACGGTATTGCCGCAACTGCGGAAGCCGCACGGATCACTGCCAACGAGGCCAAAGATGCCGCCGACAACGCGGTGTCTGTAGCTGGTGCAGTTGACGCCAAGGCGCAGACTGCTCTGGATACCGCATCCGCAGCTAACACCTCGGCACAGAACGCCGTCATCATTGCACAGGCTGCTGTTACTTCGGCAACCAACGCTAACGGTGGAGTGACTGCTGCCAATGGCCGCATCGACGTACTGGCTGACCGTGTTCTGGCGCTGGAGCAATGGCGTAACGTAGCCACTGCGACCTTGCTCAACCACGACACGAACATCACGCTGAACTACAACTCCATTGAGGCGTTGAAGTTGCGTGCTGCCGCGTTGGAGGGGCTGAACACGCCGCTTGTTCCTAGTTTCGTGATGGAGTGCGCAGACAACTTGGCGCTGGTTATCGTGAATGGTAACTTGTGGACTTCCTGCGGTAGTGCAGCGGTGTACCCAAACATAGGTGCAGGGCGCGGTGCTTCTGGTCAGACGGGCCGCTACGGTCTTGACAACTTTCAGCAAGTGTCTATCCCGTCGCAGTCTCCTGTAGTTCAAGCTACAAGCAACGGCCAAAACACTTACGCGCTACTCGCCAACGGCGACCTGTACGTTTGGGGAAACAACGGGTACGGGCAGCTAGGATTGGGGCATGCAAACGTAGTTGGCACACCAACTCTGTCGGCTCAAGGTGTTCGTGAGATCTACGGGCACTATACCAACGCTGCGTACTCGACGGCACCATCTAAGATGTACATCCGCAAAGACGATGCGATCTATTCGGCTGGTTACAACGCATACGGCCAACTGGGCGTAGGTGACGCAACCAACCGCAGTACGTGGACCGTAACTTGGGTTCTGGCTGGTGCGCCCGTTAGGAAGGTGTTCAATCTCGGGGCAGACTTCGGGTGCGGTGTTATCCTCACCGCCGACAACCGCATGTTCGTGTGCGGCAGGAATCTACAGGGACAACTGGGGACCGGTAACGGTTCTGACGTTCGTAACTGGACCGACGTTACTGCGGCATGGGGCGGTACAGCGGCTGTTGCACAGATGACAGACGCGTCTGGTGGCTTCGGCTACTCCAGCAACGCTGGTGATGGAACCTGTTGGCTGGCGATGTTCTCCAAGAACGTAGGAGTCCGCGTATGCGGTGCTAACACTTACGGGATCTTGGGTAACGGTAACACTACCAACACAGTTGTCCCGTTCAACACGCCGTTGCCGAGCTTGCCTGCGGACTGGTGTGTACTCGGGGATCAGCCGGGTGCGATCTTCATCTTAGGGCAGGACAAAAAAGTGTACTCGTGGGGCTACTGCGATAGTAACGGCCAATTAGGCCGGGGCCTGACCACTAGCAACGCCACTCCCGGTGCGCTTCCGTTGACTAACGTGGCAGCTCTACTTAGTAGGGGACAGAGCCAGTACGGTTACGGGTTCGTGTACGCCGCATTCGCATTGCTCGAAAGTGGGGTAGTTATGGGCTGGGGTGCCAATGGTTATGGTACTCAGGGTGCGGGCGACGCGGGCGTTACCCTTGTACCTAGGAGACTTCTACTTCCTAACCGCGATCCTGATGGTAGTGTTCTTGTCCCGTACAGACTGTTCTATCAGAACGGTTCCCAAGCTGCTGGCGGACCATCTACGGTCGGTTTGATCACAGCGTCCGGTTACCTGTACGGCTGGGGACACAACGGCCAGCAGCAGTTGAGCGGGCAAGGTGCGGCCAACGCCTCTGAGCTTGTGCCGGCCCTGCTGCCCGTACCTTGGAGGAAGCGCACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0f42450e753b23c5197e03086f78cef08716d79de0f856ca0c0a59065d568c5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7908
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank