Protein

View in Explore
Genbank accession
XAL80169.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,56
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MAITKIILQQMVTMDQNSITASKYPKYTVVLSNSISSITAGELTTAIESSKASAAAAKQSEINAKQSELNAKDSENEAEISATSSQQSATQSASSATASANSAKAAKTSETNAKASETAAKTSETNAKASETAAKTSETNANSSKTAAAASASAAKTSETNAAASASAAKTSETNANSSKTAAANSASAAKTSETNAKTSETNAAASATKAESVASGMRDSIGLGNSARDCPDISGNPSAYIGFMRIREGVPGWPSIADGEAYLTGVISVNDGSPSYTGIFQGWGTRSLYTYRWASNLGPQWTRHARKDEVNRLVQIPNDQTRLYAGNGTTYVEVGNNRAWGVYDSVLGKWKPLGIAQGGTGGITDTEARTNLRLGVNDSPQFANLNLVRSSDVATTAGGILQSILSDTSGTQRTRCRFYSELRGDDKAWGTIHLQKGDKNQYAGLNEDGDFSLNSGDFIGRRVKLSANFSYPVEITSAHPTIRFNETDRPANTPYYSFVFDGGNWRIQKDGYDGTKSSNAISYNYARDEIEIPNLKINAIATPVNLTQTKTNLQIPFTGLARWTDYTAPAGAEPKKYYPVIISHPLYYNGDFLVEVAMRTKSITGNEEPNCNAIHLWVRDAGWSDMGAAVFGHYFCYAKNENAILCVRGTDKGQYPHNAIYVRGDAFPIRLATTVGCIVTIPTSDWKPSTAADSPTYKWGISNSGEGIDLDTYGISNNLLDFTASATGFYCSDTYRNKYGDPYQVISANGTIQPANGVATYLDQDWNTQLTDGVNKFKPIAGQVNSPENGIVYAGFHTSFSERYATQLAGRNSRFWVRSIEAGENKEWLKLITATLAPKIPTDARDGFISDNAGDTSWAPSNGGGFQASYAENRIMQSWIDSAGRLYSRFLTTNQPTTSKTDVPWKSAAMLELDNRFTGNNTFIGDILCSASNPLTLKSANPTLSFVESDVDNSTYMFVADGGGFRLNRDNTGGAEIFNYSRSQNNLKFGVSSYFSLNTRFDQGWTSRGSVDVTTSGYSGIAIITTASTDSVGARNQFEVAPDNSFYLARRNRSNITGQWIINFPTAGGTLALSGTSDINYKTNIEEYDGIHSIENIKAMDLVTFVFKDDEKKRTRRGVIAQQIEQIDPTYVKHTYEPCGEPIVDDDGVVQGYTDTKERVVLDNNVLLLDALCAIKVLAQRDEEKTERINKLEKDVEDLKTVVEHLLTTMKNS
Physico‐chemical
properties
protein length:1214 AA
molecular weight: 131305,32110 Da
isoelectric point:5,57456
aromaticity:0,08814
hydropathy:-0,47175

Domains

Domains [InterPro]
DC_0608
ATT
2–176
DC_0608 DC_0195
Coil
Unmapped
57–77
Coil DC_0401 IPR030392 Coil
IPR030392
CHP
1078–1190
IPR030392
XAL80169.1
1 1214
Architecture
ATT
STR
STR
ATT 2-176 | STR 177-566 | STR 638-1214
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAL80169.1
1 1214
Domain Start End Length (AA) Confidence
N-terminal 1 521 521 0,5160
Central domain 522 734 214 0,7697
C-terminal 735 1214 479 0,9206
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-521
Central
522-734
C-terminal
735-1214

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SCF
[NCBI] 		3143147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAL80169.1 [NCBI]
Genbank nucleotide accession
PP735124.1 [NCBI]
CDS location
range 20464 -> 24108
strand +
CDS
ATGGCTATAACTAAAATAATCTTACAACAAATGGTCACTATGGACCAGAATAGCATAACTGCAAGCAAATATCCTAAGTATACAGTTGTGCTTTCTAATTCTATTAGCTCTATTACGGCAGGAGAACTAACTACTGCTATAGAATCCTCTAAAGCTTCTGCTGCAGCAGCTAAACAATCAGAGATTAATGCTAAACAGTCGGAACTAAACGCTAAAGACTCGGAGAATGAAGCGGAAATTTCCGCAACATCTTCCCAGCAGTCTGCAACTCAGTCTGCTTCTTCTGCTACTGCTTCTGCTAATAGTGCTAAAGCTGCTAAAACTTCTGAAACTAACGCAAAAGCTAGCGAGACAGCTGCAAAAACTTCAGAAACTAACGCAAAAGCTAGTGAAACCGCAGCTAAAACTTCTGAGACTAATGCTAATAGTAGCAAAACTGCTGCGGCTGCTTCTGCATCAGCTGCTAAAACTTCAGAAACTAATGCTGCAGCATCTGCTTCTGCGGCCAAAACCTCTGAAACTAACGCTAATAGTAGTAAAACTGCTGCTGCTAACAGTGCTAGTGCTGCTAAAACCTCAGAAACTAATGCTAAAACCTCAGAAACTAATGCGGCTGCTTCTGCTACTAAAGCTGAAAGTGTAGCTTCTGGTATGCGTGATTCCATAGGCCTGGGTAATTCAGCTCGTGATTGTCCAGATATTTCTGGTAATCCTTCTGCGTACATTGGTTTTATGCGTATTCGTGAAGGTGTACCTGGGTGGCCTTCTATTGCTGATGGAGAGGCATATTTAACTGGTGTTATTTCTGTTAATGATGGGTCTCCTTCCTACACTGGTATTTTTCAAGGGTGGGGTACTCGCTCATTATACACTTATCGTTGGGCAAGCAATCTAGGCCCTCAATGGACACGTCATGCTCGTAAAGATGAGGTAAATAGACTTGTACAGATACCAAATGATCAGACTAGATTATATGCCGGTAATGGTACTACGTACGTAGAGGTAGGAAATAATAGAGCTTGGGGTGTATATGACTCTGTGCTAGGTAAGTGGAAACCTCTTGGTATAGCTCAAGGAGGTACTGGTGGAATTACGGATACAGAGGCACGTACCAACCTGAGATTAGGAGTAAATGATAGCCCCCAGTTTGCAAATCTTAATCTTGTAAGATCTTCAGATGTAGCAACTACGGCAGGGGGTATTCTACAAAGCATCCTCAGTGATACGTCAGGGACGCAGAGGACACGCTGCCGCTTTTACTCAGAATTACGTGGTGACGATAAAGCATGGGGAACGATTCATCTTCAAAAAGGTGACAAAAATCAATATGCTGGATTAAACGAGGATGGAGACTTCTCTCTAAATAGTGGTGATTTTATTGGTAGAAGAGTAAAATTAAGTGCCAATTTTAGCTATCCAGTAGAAATAACAAGTGCTCATCCTACGATCAGATTCAACGAAACTGATCGTCCAGCAAACACACCTTACTACAGTTTTGTTTTTGATGGCGGTAATTGGCGTATCCAGAAAGACGGTTATGACGGTACAAAAAGTAGTAATGCTATTAGCTATAACTATGCAAGAGATGAAATAGAAATTCCAAATCTCAAGATTAATGCTATTGCCACCCCCGTAAACCTTACACAGACAAAAACAAACCTGCAAATACCATTTACTGGCTTAGCTCGTTGGACAGATTATACAGCTCCTGCTGGCGCAGAACCTAAAAAATACTATCCTGTAATTATAAGCCATCCATTATACTACAATGGTGATTTCCTTGTTGAAGTTGCTATGAGAACAAAATCTATAACTGGAAATGAGGAACCTAACTGTAACGCTATTCATTTATGGGTGAGAGATGCTGGATGGTCTGACATGGGTGCAGCAGTATTTGGTCACTATTTCTGCTATGCTAAAAACGAAAATGCTATCCTATGTGTTCGAGGTACTGATAAGGGTCAGTATCCTCATAATGCAATTTATGTTCGCGGAGACGCTTTTCCTATTAGGCTTGCTACAACTGTTGGTTGCATCGTAACCATACCTACGTCTGACTGGAAGCCTTCAACTGCAGCAGATAGTCCTACATACAAATGGGGTATCTCAAACTCAGGAGAGGGTATTGATCTTGATACCTACGGCATCAGTAATAATTTGCTTGATTTTACAGCAAGTGCGACGGGATTTTACTGCTCTGATACATATCGTAATAAGTATGGAGATCCTTACCAAGTAATATCAGCAAATGGCACTATCCAGCCAGCTAATGGAGTTGCAACATACTTAGACCAAGATTGGAACACTCAGCTTACAGATGGAGTAAATAAGTTTAAACCTATTGCTGGACAAGTAAACTCACCGGAAAATGGAATTGTTTATGCCGGTTTTCACACCAGTTTTAGTGAAAGATATGCTACTCAACTTGCAGGACGTAATTCCAGATTCTGGGTAAGAAGTATTGAAGCTGGGGAAAATAAAGAATGGTTAAAACTTATTACTGCTACATTAGCTCCTAAAATTCCTACAGATGCACGAGATGGTTTCATCAGTGATAACGCAGGAGATACCTCTTGGGCTCCTAGCAATGGTGGGGGTTTTCAGGCTAGTTATGCCGAAAACCGCATTATGCAGAGCTGGATTGATAGTGCTGGAAGATTATACAGCAGATTTCTAACAACTAATCAGCCTACAACTTCGAAAACGGATGTTCCCTGGAAAAGTGCTGCGATGCTAGAGCTGGATAACCGCTTTACTGGTAATAATACTTTTATTGGGGATATTTTATGTAGCGCTTCAAACCCACTTACTCTTAAGTCTGCAAATCCTACGTTATCCTTTGTGGAGTCCGACGTAGATAACTCCACATACATGTTTGTAGCAGATGGTGGTGGTTTTAGGCTTAATAGGGATAATACTGGAGGTGCGGAAATATTTAACTACAGCCGTTCCCAGAATAACCTTAAATTTGGAGTAAGTTCTTATTTTTCTCTAAACACTAGATTTGATCAGGGATGGACATCTAGAGGTTCTGTAGATGTAACTACTTCAGGGTATAGTGGCATTGCTATTATTACAACAGCCTCAACTGATAGTGTTGGTGCACGTAACCAATTTGAGGTTGCACCAGACAATAGTTTTTACTTAGCTCGACGTAATAGAAGTAACATTACTGGACAATGGATCATAAACTTCCCTACTGCTGGAGGTACTCTAGCACTTAGTGGTACATCGGATATTAACTACAAGACTAATATAGAAGAATATGACGGTATTCATTCCATAGAAAATATTAAGGCTATGGATCTTGTTACTTTTGTATTTAAGGATGATGAGAAAAAACGTACTCGCAGAGGGGTTATTGCTCAGCAGATTGAGCAGATAGATCCTACATACGTTAAACATACGTATGAACCATGTGGGGAACCCATTGTTGATGATGATGGGGTTGTTCAAGGGTATACTGATACGAAGGAAAGGGTTGTTCTAGATAATAATGTTCTTTTATTAGATGCGCTATGCGCTATAAAAGTATTAGCACAACGGGATGAGGAGAAAACCGAACGTATTAATAAACTTGAAAAAGATGTGGAAGATTTGAAAACTGTAGTAGAGCATCTATTGACTACTATGAAAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
92368ee640917856f7527443499f213d6a730b7b851d4726671adefa2fbfbcf4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a lytic phage that eliminates Salmonella Enteritidis from contaminated fresh produce Dapuliga,C.C. and Schmidt,S. 2020-12 — GenBank