Protein

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Genbank accession
YP_009789749.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MAATELIPWINSAGEGGVRNSMQEYPGTGKNGPFEFNFAGGYIDPAHVKAYRYDPVTALTFPQTLTFIGPNQVRTSDVIPVGQFVVVYRDTPKDAPLVDYSEGAVMDEANLDKSNDQAVFIAAEMLDRFDAINSTSAEAIQRSVLAYNTANDALDLSHQALDASANAVSTANAANSKANAATSTANDAHDIAVGIDGKAQSALDASGNAVSTANAAKSTAEGIDAKATKAMSDAAASVTKANSADANATTALNTANSVSGKADNAVSTANAASSTAGAAQTRANGSLPKNGTEAMGGNIKFASVTVGGAGAVHVNADLGGSFASWNAERQYAVQLDAPNPGSAYGGIRWTQWNSRHLAAIDAYAGGNNGTLPVINFHMGTQASAWSFNQYDITRGAGGTVWGTWNINPAPKRNSYGNMGYVLSDNSSTITINWGGAFNCYVDGYFQGNMWHTGNLDPCTNARASDLYNINQSAINARAKGSRFTFDYDGTNGRTNIIVDATLVSYVQNNVSDRRLKENIQAADRDVLALIDRVKFYSFDWRSNGTHEEHGVIAQQVQSVDPRWVHTPSAGEDPLKTPLGINTFALTLDLLRAVQQLSAEVKALKAAAS
Physico‐chemical
properties
protein length:608 AA
molecular weight: 63954,48660 Da
isoelectric point:5,17857
aromaticity:0,08059
hydropathy:-0,29194

Domains

Domains [InterPro]
DC_0245
STR
1–566
DC_0245 DC_1807
IPR005604
ATT
21–129
IPR005604 IPR030392
IPR030392
CHP
511–564
IPR030392
YP_009789749.1
1 608
Architecture
STR
ATT
STR
RBD
STR 1-20 | ATT 21-129 | STR 130-568 | RBD 569-607 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RS-PI-1
[NCBI] 		1958965 Uroviricota > Caudoviricetes > Autographivirales > Ampunavirus > Ampunavirus RSPI1
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789749.1 [NCBI]
Genbank nucleotide accession
NC_047816.1 [NCBI]
CDS location
range 6040 -> 7866
strand -
CDS
ATGGCTGCAACCGAACTCATTCCGTGGATCAATTCGGCGGGTGAGGGCGGGGTCCGCAACTCCATGCAAGAGTACCCCGGCACCGGCAAGAATGGTCCCTTCGAGTTCAACTTCGCAGGCGGCTACATCGACCCGGCGCACGTCAAGGCTTATCGGTACGATCCGGTCACGGCCCTGACGTTCCCGCAAACGCTCACCTTTATCGGCCCCAACCAAGTCCGCACGTCGGACGTGATCCCCGTGGGCCAGTTCGTCGTGGTGTACCGCGACACTCCCAAGGACGCACCGCTCGTCGATTACAGCGAAGGCGCTGTGATGGATGAAGCGAACCTCGACAAGAGCAACGACCAAGCCGTGTTCATCGCGGCGGAAATGCTCGACCGATTCGACGCGATCAACTCGACCAGCGCGGAGGCAATCCAGCGCTCGGTGCTCGCATACAACACTGCGAACGACGCACTCGACCTATCGCATCAAGCGCTGGACGCATCGGCCAACGCCGTGTCCACTGCGAACGCCGCGAACTCGAAGGCGAACGCCGCAACCTCGACGGCCAACGACGCGCACGACATCGCAGTAGGCATCGACGGCAAGGCGCAGTCCGCGCTCGACGCCTCGGGCAATGCGGTATCGACCGCGAACGCAGCGAAGTCCACGGCTGAAGGTATCGACGCCAAGGCCACGAAGGCGATGAGCGACGCAGCCGCGTCCGTGACGAAGGCGAACTCTGCCGACGCTAACGCGACGACCGCGCTGAACACGGCCAACAGCGTGAGCGGCAAGGCCGACAACGCTGTCTCCACAGCCAATGCGGCGTCTTCGACGGCGGGCGCAGCACAGACTCGTGCCAACGGTAGTTTGCCGAAAAACGGCACCGAGGCGATGGGCGGTAACATCAAGTTCGCATCGGTGACGGTCGGTGGGGCGGGTGCAGTGCATGTGAATGCCGACCTCGGTGGGTCGTTCGCGTCATGGAACGCCGAGCGGCAGTACGCCGTCCAGCTAGACGCTCCGAATCCCGGTAGCGCGTACGGCGGCATCCGCTGGACTCAGTGGAACTCCCGGCACTTGGCCGCGATTGACGCCTACGCTGGCGGCAACAACGGCACGCTTCCGGTCATCAACTTTCACATGGGCACGCAGGCGAGCGCGTGGTCCTTCAACCAGTACGACATTACTCGCGGTGCCGGTGGCACGGTGTGGGGAACGTGGAACATCAACCCGGCACCGAAGCGCAACAGCTACGGCAACATGGGCTACGTGTTGAGCGATAACAGTAGCACCATCACGATCAATTGGGGCGGCGCGTTTAACTGCTACGTTGATGGCTATTTTCAAGGCAATATGTGGCACACGGGCAACCTCGACCCCTGCACGAACGCTCGCGCTTCCGACCTTTACAACATCAACCAGTCAGCAATTAACGCCCGCGCAAAGGGCAGTCGCTTCACGTTTGACTATGACGGCACTAACGGTCGCACCAACATCATCGTTGATGCGACGCTCGTTTCGTACGTGCAGAACAACGTGTCCGACCGCAGGCTCAAGGAGAACATCCAAGCAGCCGACCGTGATGTGTTGGCCCTGATCGACCGCGTGAAGTTCTACTCGTTCGACTGGCGGTCCAACGGGACGCACGAGGAGCACGGGGTCATCGCGCAGCAAGTGCAATCCGTGGACCCGCGTTGGGTACACACGCCGTCCGCTGGCGAAGACCCATTGAAGACGCCACTTGGCATCAACACGTTTGCGCTCACACTCGACCTGCTCCGTGCAGTGCAGCAGTTGAGCGCAGAGGTTAAAGCACTCAAAGCTGCGGCCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d92391f8696a852a294a9ec2f586048e0c051a0def3be1e5f08d8c97472067f1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6603
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and complete genomic analysis of a novel lytic bacteriophage infecting the Ralstonia solanacearum Su,J., Sun,H., Liu,J., Guo,Z., Fan,G., Gu,G. and Wang,G. 2017-09-19 — GenBank