Protein

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Genbank accession
YP_007877324.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSKIILKTIKQPDCTLGVMTIEGSDFRCFTLELPDKGNASNVSCIPAGTYEYFKRVSNVNGNVIELRNVVGRKYVQVHTGNFTSDILGCILVGKTIADINSDGIPDVTSSGNTMKALLPILDDEGTITIERI
Physico‐chemical
properties
protein length:132 AA
molecular weight: 14310,31500 Da
isoelectric point:5,31566
aromaticity:0,05303
hydropathy:0,04242

Domains

Domains [InterPro]
IPR043732
STR
7–122
IPR043732
YP_007877324.1
1 132
Architecture
STR
STR 7-122 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage helene 12B3
[NCBI] 		573173 No lineage information
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007877324.1 [NCBI]
Genbank nucleotide accession
NC_021067.1 [NCBI]
CDS location
range 91167 -> 91565
strand -
CDS
ATGAGTAAAATTATTTTAAAAACTATCAAACAACCAGATTGTACACTAGGTGTGATGACAATTGAAGGTTCGGATTTCCGTTGCTTTACCTTGGAACTACCAGATAAGGGGAATGCTTCGAATGTAAGTTGTATTCCTGCAGGAACATATGAATACTTTAAGCGAGTATCTAATGTTAATGGTAATGTGATCGAGTTACGTAATGTAGTAGGCCGAAAATACGTACAAGTGCATACTGGAAATTTCACCTCTGATATCCTAGGTTGTATTTTGGTAGGTAAAACTATCGCAGATATTAACTCCGATGGTATTCCTGATGTGACAAGTAGTGGTAACACTATGAAGGCTTTACTACCTATCTTGGATGATGAAGGTACTATTACTATCGAACGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4ef95e4bfffc1f4d9cd22e1a8e4ada46ebd96b34a973c2379570e55701388c23
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9218
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage helene 12B3 Henn,M.R., Polz,M., Kauffman,A.K.M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Richards,J., Rizzolo,K., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank