Protein

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Genbank accession
QBX27511.1 [GenBank]
Protein name
lysin
RBP type
TSP
Evidence DepoScope
Probability 0,98
Protein sequence
MVAYLDFKSRVLNNGYDHDGGAFGWQCWDGFAEWCVANGIPIINTDPINHTGYAMDLWEQRKTNGMLTYFDEVETMEGGDVAIFKEVASVTPSSHVAIFDSDIDGVYGWFLGQNQGGITYAGGGSAFNLVMLPYSATYPTAFRVKKGGKMQVKNVNGDIYSSLITSSRPEIFGSWGERDMKAIKYIVLHGTYGLSVQNAVDTWTVGGRDASAQYIVHDNQIVGCVGENFTAWHCGGTGAITNQNSIGVEHVNNRINGENSTFSAQTIETGAKLVAEICKRLGIVPSNKTIVPHRSVFATACPQAMDVPSYIEKVKQYYNGTTKKETPKPQPKETKSVASNEQTSARLLIFDEDLNGYKKGDYLLLNFDRGTYSKVNDKAEVDFIKKQYTGIQIEHVSKAYPAHVRYIQGFKLNKI
Physico‐chemical
properties
protein length:415 AA
molecular weight: 45841,06770 Da
isoelectric point:6,37469
aromaticity:0,11084
hydropathy:-0,33301

Domains

Domains [InterPro]
IPR036505
STR
173–329
IPR036505 DC_2183
IPR002502
STR
175–317
IPR002502
IPR036505
STR
180–305
IPR036505
IPR051206
Unmapped
180–362
IPR051206
IPR036505
STR
180–335
IPR036505
IPR002502
STR
181–303
IPR002502
IPR002502
STR
183–302
IPR002502
QBX27511.1
1 415
Architecture
STR
RBD
STR 173-335 | RBD 360-415
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX27511.1
1 415
Domain Start End Length (AA) Confidence
N-terminal 1 63 63 0,4121
Central domain 64 311 249 0,5785
C-terminal 312 415 103 0,5721
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-63
Central
64-311
C-terminal
312-415

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan392
[NCBI] 		2548145 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus parauberis KRS-02083
[NCBI] 		1207545 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus parauberis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX27511.1 [NCBI]
Genbank nucleotide accession
MK448926 [NCBI]
CDS location
range 38548 -> 39795
strand +
CDS
ATGGTTGCATACCTTGATTTTAAAAGCAGAGTTTTAAATAATGGTTATGATCATGACGGTGGAGCTTTTGGCTGGCAGTGTTGGGATGGTTTCGCAGAATGGTGTGTAGCAAATGGCATTCCAATCATCAACACGGATCCTATAAATCATACTGGCTACGCTATGGATTTATGGGAGCAACGCAAGACAAATGGCATGCTAACTTATTTTGATGAGGTAGAAACAATGGAAGGCGGTGACGTTGCAATCTTTAAAGAGGTTGCAAGTGTCACACCATCTAGTCATGTAGCTATTTTTGATAGTGACATAGACGGCGTTTATGGGTGGTTTCTTGGTCAAAATCAGGGCGGTATTACATATGCAGGCGGAGGCTCAGCATTTAATCTTGTCATGTTGCCTTACTCTGCGACATATCCAACGGCATTCAGAGTTAAAAAAGGAGGAAAGATGCAAGTTAAAAACGTAAATGGGGATATTTACTCAAGTTTAATCACTAGTTCACGCCCTGAAATATTTGGAAGTTGGGGAGAGCGTGACATGAAAGCAATCAAATATATTGTATTACACGGAACGTATGGATTATCGGTTCAGAATGCAGTTGATACATGGACTGTTGGCGGAAGAGATGCAAGCGCACAGTATATTGTACACGATAATCAAATTGTTGGTTGTGTTGGCGAAAACTTCACAGCGTGGCATTGTGGAGGAACTGGTGCAATCACTAACCAAAATAGCATCGGTGTAGAGCATGTAAACAATAGAATTAATGGAGAAAATTCCACTTTCTCAGCTCAAACAATTGAGACTGGGGCAAAATTAGTAGCTGAAATTTGTAAACGTCTAGGAATTGTACCAAGTAATAAAACTATCGTGCCACACAGGTCGGTATTTGCGACTGCATGTCCACAAGCTATGGACGTACCATCGTATATTGAAAAAGTTAAACAGTATTACAATGGCACGACTAAAAAAGAAACACCTAAACCACAACCAAAGGAGACTAAATCAGTGGCATCCAATGAACAAACTAGCGCAAGGCTATTAATATTCGATGAAGATTTAAACGGTTACAAAAAAGGCGATTATTTATTGCTAAATTTTGATCGTGGAACTTATAGCAAAGTAAATGATAAAGCAGAAGTTGACTTTATCAAAAAACAATACACTGGCATTCAAATTGAACATGTAAGTAAGGCTTACCCAGCACATGTAAGATACATACAAGGATTTAAACTTAATAAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dbc4b9cf898b95750a7fa557123474a21fa37e3256ec6ee72ac820757c4f7922
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7501
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank