Protein

View in Explore
Genbank accession
QYC52539.1 [GenBank]
Protein name
putative tail fiber protein 2
RBP type
TSP
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MADDIIQLISSEADAAVDQIIEDSVRLHKVVNGTGVETVVTEDGSIIPTVRKALVDNLYFKTPPIPWRSGAQAREFNQLYSFEDVNGKVSWWYAPGATNSSPVTQGDQPATDTRWRVFLDAGNMDGIYAPILSPDFRGNPRVPTPGEGDASTTIANTLWTKNAIAKAIDIALPSWDDAIFNNITVKNNSVLNNVRADGQVTFTGPKVDAVDAEFNLKKINLVGEDAEINFLWSDGSGYRTNLTPNKIFTAEMTANRIAGSNIEAGQPRDVGTTIRGHGQSVFDTVHISKNDRQPVDADTLTVTGVTRVQNLIVEGEAVGIKSNVDGTDISPSNINNQGHINTKSLLVTEETQLDGITRIGDVEFLGSVKGLDMNIEFDEMNLDNLTVHESLVVEGRTVMSAATIGDVVFTGTVAGLTFPAPNIDGMEVKPSSVETGTLVVEGDTTVSNLNVTGTVTGINLSVDGTDIAPSNVTTGDLTVNGQLTMNGQLQINNIDGQSVRTGSLTVTQGATIQNLSVPEDGEITGFGRVVDGEDIRPNSVAITEGLSVTGGATVGGGLTVNGVTNLRDVNITGTVTGINPDFGTDSTVNTGTVNATTVTANRVNAGSVNTGDITVSGRILDEDGNDFALRVSPEQIGEAITQIAIQPHSVTTRLSDTDKGSVTTGRLVADTGNISTLTAGDLTIQNGRINGNLTLVGELVDAEGNPIASLDIPSLIQGKDISPRNVTAAQLSVSGETTIGGPVETGALTVTGGLSTTGSATVGEQLSVLGSATVTGSLNSGALTASSANISGTSNLGNVVISGTLTDAEGNPLGSVESINGRDITPRNVTASGSFSAVSGGITENLTVGGNLTATGNLRAGETTLGSTTTASLETGAATVSTLTVEGGSISAPMASASFGMNATVGQDLTVTGNTVLGHVDVEFEGDRLRVVGNQRIEGNLWVTGNINGNVDISGQDINPRSVSASGDVNVAGTLTTPIGNIDSLRVGVSGTAVGLSVLNNATVAGDLTVAGNINATIDQSEQDVVTKSLQTGNIVAEAITTNTLSVTGNITATNSEIWTGSVVANQFMVRPQIRTLDSGAFVPDGTTNIYNITLTQNTRIEAPSQMIQMGLGGSIVMYLNQDVTGGRQVTFSTEYQALNDGEINLNPGGVTVVQLMYPGHGSTIDTLILPRT
Physico‐chemical
properties
protein length:1173 AA
molecular weight: 121264,72390 Da
isoelectric point:4,28324
aromaticity:0,03581
hydropathy:-0,06010

Domains

Domains [InterPro]
DC_0062
STR
1–370
DC_0062 DC_0092
IPR058969
ATT
12–118
IPR058969 DC_0062 IPR058970
QYC52539.1
1 1173
Architecture
STR
ATT
STR
STR
STR 1-11 | ATT 12-118 | STR 119-661 | STR 925-1173
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC52539.1
1 1173
Domain Start End Length (AA) Confidence
N-terminal 1 874 874 0,9587
Central domain 875 1073 200 0,3417
C-terminal 1074 1173 99 0,6135
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-874
Central
875-1073
C-terminal
1074-1173

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SSBI34
[NCBI] 		2861009 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC52539.1 [NCBI]
Genbank nucleotide accession
MZ520832 [NCBI]
CDS location
range 74059 -> 77580
strand +
CDS
GTGGCTGACGATATTATTCAACTGATCAGTTCAGAAGCTGATGCTGCTGTTGACCAAATCATTGAAGATTCCGTAAGGCTTCATAAGGTTGTCAATGGAACTGGTGTTGAGACTGTAGTTACAGAAGATGGTAGCATTATACCAACTGTAAGGAAAGCACTTGTTGACAACCTGTATTTCAAAACACCCCCTATTCCTTGGAGATCTGGAGCACAAGCAAGGGAATTCAACCAACTGTACTCCTTTGAAGATGTAAACGGAAAGGTTTCTTGGTGGTATGCCCCAGGAGCAACAAACTCCTCCCCTGTTACTCAAGGAGACCAGCCAGCAACAGACACACGTTGGAGAGTCTTCTTAGATGCTGGAAACATGGATGGAATATATGCTCCGATCCTGTCTCCAGATTTCAGAGGGAACCCTAGAGTACCTACCCCTGGCGAAGGTGACGCAAGTACCACTATTGCCAACACTTTGTGGACAAAGAATGCTATTGCAAAGGCAATAGATATCGCACTTCCAAGCTGGGACGATGCAATTTTTAACAACATTACCGTTAAAAATAATTCGGTACTTAATAATGTTCGAGCAGATGGTCAAGTAACTTTTACGGGACCAAAGGTGGATGCTGTTGATGCAGAGTTCAACCTGAAAAAGATCAACCTCGTTGGAGAGGATGCGGAAATAAATTTCCTTTGGTCAGATGGCTCAGGATACAGAACAAACTTAACCCCGAACAAGATCTTCACTGCGGAAATGACAGCCAACAGGATTGCTGGGTCAAATATTGAAGCAGGGCAACCAAGAGATGTCGGAACAACGATCAGAGGTCATGGGCAATCGGTCTTTGACACTGTTCATATCTCCAAAAATGACAGACAGCCTGTCGATGCTGACACGCTGACAGTTACCGGAGTAACTCGCGTACAGAACCTCATTGTAGAGGGAGAGGCGGTAGGAATCAAGTCGAATGTCGATGGAACGGACATTTCCCCTAGTAATATCAATAATCAAGGGCATATTAATACAAAATCTCTCTTAGTCACAGAAGAGACTCAGTTAGATGGTATTACAAGGATAGGGGATGTAGAGTTCTTAGGTTCTGTTAAGGGCCTGGATATGAACATCGAATTTGACGAAATGAACTTGGATAACCTAACAGTTCATGAATCCCTTGTTGTAGAGGGAAGAACTGTTATGTCGGCGGCAACCATCGGAGATGTGGTGTTCACAGGGACTGTTGCTGGCTTGACCTTCCCTGCTCCGAACATTGACGGTATGGAAGTTAAGCCGAGTTCAGTGGAGACGGGAACCCTTGTAGTGGAGGGTGACACCACAGTCTCTAATCTTAATGTTACCGGAACGGTAACGGGAATCAACCTGTCCGTCGATGGAACCGATATCGCACCGTCAAATGTGACCACTGGTGATTTAACGGTAAATGGTCAGTTAACCATGAACGGACAGCTACAGATCAACAATATCGATGGTCAATCTGTTAGAACTGGTTCACTGACAGTCACGCAGGGGGCAACGATCCAGAATCTGTCCGTACCTGAGGATGGAGAAATAACTGGATTCGGGAGAGTTGTAGATGGTGAGGATATCCGTCCAAACTCTGTTGCTATTACCGAAGGTTTGTCAGTTACCGGAGGAGCTACCGTTGGCGGGGGACTCACTGTTAACGGAGTAACAAACCTCAGGGATGTTAATATAACAGGAACGGTAACAGGAATCAACCCTGATTTCGGAACAGATTCCACTGTCAACACAGGAACGGTAAATGCAACAACCGTAACAGCTAACCGGGTCAATGCGGGAAGTGTAAATACTGGCGATATAACGGTATCAGGAAGGATTCTAGACGAAGATGGGAATGATTTTGCGCTGAGGGTAAGCCCAGAGCAGATTGGTGAGGCTATTACTCAGATAGCTATCCAACCTCATTCCGTAACAACTCGCCTAAGCGATACCGACAAAGGTTCAGTGACCACAGGAAGACTAGTTGCAGACACTGGAAACATATCCACCTTGACAGCAGGTGATCTGACCATTCAAAATGGAAGGATCAATGGTAACTTGACTCTTGTTGGAGAGTTAGTTGATGCAGAAGGGAACCCAATTGCAAGCTTGGACATCCCATCGCTTATCCAAGGTAAAGATATCTCCCCTCGTAATGTGACCGCAGCACAACTAAGTGTTAGTGGTGAGACAACGATAGGTGGGCCTGTAGAGACAGGGGCATTGACAGTAACTGGCGGTTTAAGTACCACAGGATCTGCAACCGTTGGTGAACAACTTTCAGTATTGGGATCTGCAACCGTAACAGGAAGCCTTAATTCAGGGGCATTGACTGCATCATCTGCAAACATCAGTGGTACATCTAACTTGGGGAATGTTGTAATCTCTGGGACCCTGACAGATGCAGAAGGAAACCCTCTGGGGTCTGTAGAATCAATAAACGGAAGGGATATAACCCCAAGAAATGTTACCGCCTCTGGCTCCTTTTCTGCCGTGTCTGGAGGAATCACTGAGAACTTAACCGTTGGCGGTAACTTAACTGCAACAGGGAATCTTCGTGCCGGAGAGACCACACTGGGTTCAACCACAACGGCAAGCTTGGAAACGGGCGCTGCAACTGTATCTACTTTGACAGTGGAAGGTGGTTCAATTTCTGCTCCTATGGCATCTGCCTCCTTCGGAATGAATGCAACCGTAGGCCAAGACTTGACAGTAACTGGAAATACTGTCTTGGGGCATGTTGATGTAGAGTTTGAAGGTGACAGGCTCAGAGTTGTAGGAAACCAACGAATAGAGGGGAACCTTTGGGTAACTGGAAATATCAACGGAAACGTAGATATCTCTGGACAGGACATAAACCCACGGTCCGTCTCAGCATCTGGTGATGTTAATGTAGCAGGAACCCTGACAACGCCTATCGGAAACATCGATTCTTTACGAGTGGGTGTTTCAGGAACAGCCGTTGGGTTATCTGTTCTTAACAATGCCACTGTCGCAGGTGATCTGACGGTAGCTGGAAATATTAATGCTACAATTGACCAGTCAGAGCAGGATGTGGTGACAAAGAGTCTGCAAACTGGTAATATAGTTGCAGAGGCTATTACAACCAACACCTTGTCAGTGACTGGCAATATTACCGCGACAAATTCTGAGATTTGGACAGGATCTGTTGTTGCTAACCAGTTTATGGTTAGACCTCAGATCAGGACATTGGATTCCGGAGCTTTTGTTCCGGATGGCACAACCAATATCTACAACATAACCTTGACTCAGAATACTCGAATTGAAGCCCCAAGTCAAATGATTCAAATGGGTCTTGGCGGTTCCATTGTCATGTACTTGAACCAAGATGTCACTGGTGGAAGGCAAGTAACGTTTTCAACTGAGTATCAGGCACTGAATGACGGGGAGATTAACCTCAACCCAGGTGGTGTCACGGTGGTTCAGTTGATGTACCCTGGACACGGGAGTACGATCGATACGTTGATTCTGCCACGTACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c50d27025c901767888b28a292970f209fb78980059f81577ae5404580de2704
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2970
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SE-Phage-SSBI34 a novel bacteriophage of Salmonella typhimurium, provides insight in to genus certrevirus Sattar,S., Khanum,S., Altermann,E., Bailie,M., Shamsi,B. and Ullah,I. 2022-01-25 — GenBank