Protein

View in Explore
Genbank accession
QDH50496.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,60
TF
Evidence RBPdetect2
Probability 0,57
Protein sequence
MAYQGINTGSAPNDGTGDSLVSGGIKINSNFSEIYNLIGDGSSLATGVVTTITAGTNVAVNTTTGYVEISAPTPVSIATTDVDISRNLKVAGITTLGVTTVTTLLTSGITTLASQGGITTTGGDLYVGGDLYVSDDIVYDEVTGRNINITGVGTFGSMFVGAGHSAGSINVSGVSTLTGTVSLGSSLLMTDDKQFILGEQSEFTIFHNDSDGNVIRANTGALNIKADTQNFTSGAGTTQVMSTNVDGNYGVELYYNNNKRFETKHGGADVLGYFKVSGISTLGIVTGATYYGDGSNLTGVVTTLTGADGSGMTGVVTTLTGADGSGMTGVVTTLTGADGSGMTVLMVQE
Physico‐chemical
properties
protein length:349 AA
molecular weight: 35141,37870 Da
isoelectric point:4,17303
aromaticity:0,06017
hydropathy:0,13897

Domains

Domains [InterPro]
DC_1998
STR
1–348
DC_1998
IPR008987
ATT
4–90
IPR008987
IPR036240
STR
4–81
IPR036240
G3DSA:1.20.5.960
Unmapped
13–46
G3DSA:1.20.5.960
QDH50496.1
1 349
Architecture
ATT
STR
ATT 1-90 | STR 91-348 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50496.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 33632 -> 34681
strand -
CDS
ATGGCATACCAAGGTATTAACACTGGCTCAGCTCCTAATGATGGGACAGGTGATTCACTAGTTTCTGGTGGTATTAAAATCAACAGTAACTTTAGTGAGATCTATAATCTCATTGGTGACGGTTCATCACTTGCTACAGGTGTTGTAACCACCATCACTGCAGGAACAAATGTTGCTGTAAATACAACAACAGGATACGTTGAAATTTCTGCACCTACTCCAGTCTCCATTGCGACGACGGATGTAGATATCTCTAGAAATCTAAAGGTAGCTGGTATTACAACGTTAGGTGTAACTACCGTAACTACACTTCTTACTTCTGGTATCACAACACTTGCAAGTCAAGGCGGTATTACTACCACTGGTGGTGATTTGTATGTTGGTGGTGATCTTTATGTGTCTGATGATATTGTCTATGATGAAGTAACAGGTAGAAATATTAATATCACGGGTGTTGGTACTTTCGGATCAATGTTTGTTGGTGCAGGTCATTCTGCAGGAAGTATTAATGTTTCAGGAGTATCCACACTTACGGGTACTGTAAGTCTTGGTTCATCTTTATTGATGACCGATGACAAACAATTTATCTTAGGAGAACAATCAGAATTTACTATCTTCCATAATGACTCTGATGGGAATGTCATTAGAGCTAATACAGGTGCTTTAAATATTAAGGCAGATACCCAAAACTTTACTAGTGGTGCTGGAACAACACAAGTAATGTCAACTAACGTTGACGGAAACTATGGTGTTGAGCTGTATTATAACAACAATAAGAGATTTGAAACAAAACATGGTGGTGCTGATGTATTAGGTTATTTCAAAGTATCTGGTATTTCTACTCTTGGAATCGTAACTGGTGCAACATATTATGGTGATGGATCGAACCTGACTGGTGTTGTAACCACTCTGACTGGTGCTGATGGTTCAGGAATGACTGGTGTAGTCACCACTCTGACTGGTGCTGATGGTTCAGGAATGACTGGTGTAGTCACCACTCTGACTGGTGCTGATGGTTCAGGAATGACTGTGCTGATGGTTCAGGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ccbaf495b221852f22d7be297c860b72979149e944329f67c936f21b8480d72f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6962
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank