Protein

View in Explore
Genbank accession
XAO34252.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,94
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MTESLNSRVAKFDEIVTNVDTWVKGGSADAVDFGGGPVDSPAKLIEDQRTAISAAAAALISQKDEQINQQANGVLAQANAAASNANGSAGAAAASAASAAASASDSAASAAAAAASSAQKFVTSAGAANQKPNTSYTYINPLSRVCTITGGGDGSNFQVIGYGHNRQKFLGAATTGVWNYLPVNGIANLNFYRIAGDGTRTKLTYTSGTPTGNQWTGTVGASSVTWTLGTALDTLSKLFVEDPFATIPTTGTQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHTNDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCNGATSGTTFAQSCKVNSAYSWTHGYLNTINGTACSVGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTSVGTNPFVSRRQVPLSAVTSTVSSSYLATLDNITGISLPASTAWKCTLEVWARSTALRSAAWELKFRAHTDASGNLTIGTVTTVWSDVDANFGTGANVATVSVAVSSNQLNFVIQPRIDSPVGAKWGAVLHINEVN
Physico‐chemical
properties
protein length:568 AA
molecular weight: 58454,29650 Da
isoelectric point:6,40384
aromaticity:0,08627
hydropathy:-0,16127

Domains

Domains [InterPro]
DC_0261
STR
1–317
DC_0261 IPR011049
IPR011049
STR
335–465
IPR011049
DC_0296
RBD
433–568
DC_0296
XAO34252.1
1 568
Architecture
STR
STR
RBD
STR 1-317 | STR 322-465 | RBD 466-568
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO34252.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,8895
Central domain 142 402 262 0,7729
C-terminal 403 568 165 0,9796
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-402
C-terminal
403-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage PY045S1
[NCBI] 		3145148 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO34252.1 [NCBI]
Genbank nucleotide accession
PP358255.1 [NCBI]
CDS location
range 16959 -> 18665
strand +
CDS
GTGACCGAATCACTGAACAGCCGCGTCGCCAAGTTCGACGAGATCGTCACCAACGTTGACACGTGGGTGAAGGGCGGGAGCGCCGACGCCGTTGATTTCGGAGGCGGCCCGGTCGATTCGCCCGCAAAGCTCATCGAAGATCAGCGAACCGCCATCTCTGCGGCGGCGGCGGCGCTGATCTCGCAGAAGGACGAGCAGATCAACCAGCAGGCGAACGGCGTGCTGGCGCAGGCGAACGCGGCGGCCAGTAATGCCAACGGCAGTGCGGGCGCGGCGGCGGCTAGCGCTGCGAGCGCGGCGGCATCGGCGTCCGACAGCGCTGCGAGCGCGGCCGCCGCCGCTGCGTCGTCGGCCCAGAAGTTCGTGACGTCGGCCGGTGCGGCGAACCAGAAGCCGAACACGTCCTACACCTACATCAATCCGCTGTCGCGCGTGTGCACCATCACCGGCGGCGGAGACGGCTCGAACTTCCAGGTGATCGGATACGGCCACAACCGCCAGAAGTTTCTTGGCGCGGCCACCACTGGCGTCTGGAACTACCTGCCGGTCAACGGCATCGCCAACCTGAATTTCTACAGGATCGCGGGAGATGGCACCCGCACAAAGCTGACGTACACATCCGGCACTCCGACCGGCAACCAGTGGACCGGCACCGTGGGCGCAAGCAGCGTCACCTGGACGCTCGGCACGGCCCTGGACACGTTGAGCAAACTGTTCGTTGAAGACCCATTTGCCACGATCCCGACGACGGGCACGCAGCCTGACTATTCCTGGATCGGTGGCGGCTACGACAACGTGGTCGATCGCGGCGTGATGCAGCACGTCACGGGCGCGCACAATCGCGTGCTCGACGGCGACCACACCACGATGCTGGGTGGCAGCTACCACACCAATGACGGGGGCAGCTACAACGCATTCTGCGGTGGCACCGACAACTGGAATGGATCGGGCGCTACGCTGGGCAGCGGGCACTTCGGCGGGCTGCGCAACTATTGCAACGGCGCCACCTCTGGCACGACGTTCGCGCAGTCCTGTAAGGTGAACTCGGCGTACAGCTGGACGCACGGTTACCTGAACACCATCAACGGCACGGCATGCTCGGTCGGCGGGCGCAACAACACCGCGTCCGGCTCGGACTCGGCCGTCTTCGGCAACGGCAACACCAGCACCGCGAACTACTCGTTCGCCATCGGCAACGGCAACACGGTCGGCCATCACTACGCCCGCAGTCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACGTCGGTCGGCACGAACCCGTTCGTGAGCCGCCGGCAGGTCCCGCTGTCCGCAGTGACCTCTACTGTCAGCTCGTCCTACCTCGCCACGCTCGACAACATTACTGGCATCAGTCTTCCAGCCAGCACGGCATGGAAATGCACCCTGGAGGTATGGGCGCGCAGCACGGCGCTGAGGTCAGCGGCCTGGGAGCTGAAATTCCGAGCGCACACAGATGCCTCCGGCAACTTGACGATCGGCACTGTGACCACGGTGTGGTCCGACGTTGATGCGAACTTCGGCACGGGCGCCAACGTAGCGACGGTTTCTGTAGCGGTATCGAGCAATCAGCTCAATTTCGTGATCCAGCCACGGATCGATTCTCCTGTCGGCGCAAAGTGGGGTGCCGTGTTGCACATCAACGAGGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6f07a52f9f0757580a4a1ea7234a5897a15dcf808c50d31fceac9863974b0473
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7708
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage biocontrol success depends on synergistic interactions with suppressive soil microbiota Fields,B., Franco Ortega,S., Harper,A. and Friman,V. 2024-11 — GenBank