Protein

View in Explore
Genbank accession
YP_010673800.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MIVYNNQAPDAVNNVGQFGATEGSIGAYKQAAEYAADSKYWALLAESKFGTIDDLIAEVERLYQQGILMKQDIEDLKQDFIDQDARLMSLIAQTNAAVSDANNAVALINQKLIEVQNQLDILLGMSVDVTTLPPGTPATGSFNPTTGVISLGIPEGDPGKDGSVKDLDTAPTGVPELGDLGFYVDKDDNTVHKTTLENIANLIPSVRSVSVNGGPALDGEVALTFNKETVGLGNVLNVAQYSRQEINDKFDKTTKTYQSKAEADADAQYRQVGEQVLVWEATKYEFYTVAANKTLTPVKTEGRILTVNSRSPDSSGNIDITIPTGNPSLYLGEMVMFPYDPTKNISYPGVLPADGRLVSKESALDLGPSLVSGQLPVVSETEWQGGARQYFSWGKLADGVTDADSTNFTSIRLPDWTGGEAIRSPDSNKDANYKGRVQSQIPYIVTVNGKAPDDTNGNVVLTAANVGAFSISNNLSEITNTSQAIKNIGLADHGIATASLVKLSSFDWQTFVFTNSARYYVDYSAMTNRPEGLTYSSDTGLFIEVIGVAGSALEVRIVPFTNTNAKYITYAVRASGAIGSRTFIVREELSSALPVTVSQGGTGATTADDARLALIAAKSGDNYDITSLHNLTTALSMEQGGTGATSETAARVNLKVDKLVQSSTDTKLLDGSGDHTFFITDTDWGYFSNSDSSRIALPIISGGTGGKTPAEASEKLAAMHYQYDSSVYYGGDDLPTGIGFYSGDTSPFPGGNGAPFTYAEIMTISEGGRGGNWSQIGFSTITYEAPRYRQRTSNPSLITNWREFLIRDLNTTVDVNGFVKIASPIVKLKSDGSSEVNDQAQGVTTERLDVGVYKISGTLGFNSDASWGGIEGGFSIPQNSNGLPLLWVDYEVDEEGDITLKTYHRTHEGVPSFASNVIEGVTDGEPIDIPVGRWIDLRVEMPSK
Physico‐chemical
properties
protein length:944 AA
molecular weight: 101063,84030 Da
isoelectric point:4,51884
aromaticity:0,08263
hydropathy:-0,25604

Domains

Domains [InterPro]
DC_0709
STR
183–944
DC_0709
IPR058008
RBD
810–943
IPR058008
YP_010673800.1
1 944
Architecture
STR
STR 183-944
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SGF2
[NCBI] 		2601630 Uroviricota > Caudoviricetes > Mktvariviridae > Kuravirus > Kuravirus SGF2
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010673800.1 [NCBI]
Genbank nucleotide accession
NC_070988.1 [NCBI]
CDS location
range 11970 -> 14804
strand +
CDS
ATGATCGTTTATAATAACCAAGCACCTGATGCAGTGAATAACGTTGGGCAGTTTGGTGCTACTGAAGGCTCTATCGGAGCTTACAAGCAAGCAGCAGAATATGCAGCTGACTCCAAATATTGGGCACTGCTAGCGGAGTCTAAGTTCGGTACGATTGATGATTTGATCGCTGAAGTAGAACGTCTGTATCAACAAGGTATTCTGATGAAGCAGGATATCGAAGATCTTAAGCAGGATTTTATAGATCAAGATGCTCGTCTGATGAGCTTGATTGCTCAAACTAACGCAGCAGTCTCTGATGCTAACAATGCTGTTGCTCTCATTAATCAGAAACTTATTGAAGTTCAGAATCAGCTTGATATTCTGTTAGGAATGTCCGTTGACGTAACTACACTTCCTCCGGGAACTCCGGCTACTGGTTCTTTTAATCCGACCACTGGTGTAATCTCTTTAGGTATTCCAGAAGGTGATCCCGGAAAGGATGGTTCTGTTAAGGATTTAGATACAGCACCTACCGGTGTTCCAGAGTTAGGCGACTTAGGTTTCTATGTTGACAAAGATGACAATACTGTCCACAAAACCACTCTAGAGAACATTGCTAACTTAATCCCATCTGTTCGTTCTGTTTCTGTTAATGGAGGTCCAGCTCTTGATGGAGAAGTTGCTCTAACGTTTAACAAAGAGACAGTAGGTTTAGGGAATGTTCTGAACGTTGCTCAATACAGCCGTCAAGAGATTAATGACAAGTTTGACAAAACTACCAAGACATACCAATCAAAAGCAGAAGCTGATGCTGATGCTCAGTACCGTCAAGTTGGAGAGCAGGTCTTAGTTTGGGAAGCTACTAAGTATGAATTCTATACAGTTGCTGCTAACAAAACACTAACTCCTGTTAAAACTGAAGGTAGAATCCTTACCGTTAACTCCCGTTCTCCAGACTCTAGTGGTAACATTGACATTACCATTCCAACAGGAAACCCATCTCTGTATCTTGGTGAGATGGTAATGTTTCCTTATGACCCAACGAAGAATATCTCATATCCGGGGGTTCTTCCTGCCGATGGTCGTTTGGTGTCAAAAGAGTCTGCTCTAGACTTAGGCCCATCTCTAGTCAGTGGTCAGCTTCCTGTGGTCTCTGAAACAGAATGGCAGGGTGGTGCTCGTCAGTATTTCTCTTGGGGTAAGTTAGCAGATGGGGTCACTGATGCGGATTCTACTAACTTCACTAGTATCCGACTTCCTGATTGGACTGGCGGTGAGGCTATTAGATCTCCTGATTCAAATAAAGATGCTAATTACAAAGGTCGTGTTCAATCTCAGATCCCTTACATTGTAACCGTAAACGGAAAAGCTCCTGATGATACTAATGGTAACGTAGTCCTCACAGCTGCTAATGTTGGGGCCTTTAGTATATCTAATAACTTGTCTGAGATTACGAACACAAGTCAAGCTATCAAGAACATAGGACTTGCTGATCATGGTATAGCAACCGCCTCCTTGGTTAAGTTAAGCTCTTTTGATTGGCAGACGTTCGTTTTTACTAACTCAGCCAGATATTATGTGGACTACTCTGCCATGACTAACCGGCCAGAAGGATTGACCTACTCTTCTGATACAGGTCTTTTTATTGAAGTTATAGGGGTTGCTGGTTCAGCTTTAGAGGTTCGAATTGTCCCATTTACTAACACAAACGCAAAGTACATTACTTACGCTGTTAGGGCAAGTGGCGCCATAGGTAGTCGCACATTTATAGTACGAGAAGAGCTGTCTTCCGCACTCCCTGTGACTGTTTCTCAGGGCGGAACTGGAGCAACCACTGCTGATGATGCTCGATTGGCACTTATTGCAGCTAAAAGTGGGGATAACTATGATATCACATCCCTCCACAATCTCACTACAGCACTATCAATGGAACAGGGTGGCACAGGAGCTACTTCAGAAACAGCAGCTCGTGTTAATTTGAAAGTTGATAAACTTGTTCAGAGTTCAACTGATACTAAGCTCTTAGATGGCTCAGGGGATCATACGTTCTTTATTACAGACACTGATTGGGGGTATTTCAGTAATTCAGATTCTTCTCGAATTGCTCTACCGATAATAAGCGGGGGTACGGGAGGGAAGACTCCAGCAGAAGCTTCTGAAAAACTAGCAGCAATGCACTATCAGTATGATTCCTCAGTCTACTACGGTGGTGATGATTTACCAACTGGTATTGGATTCTACAGCGGGGACACGTCACCCTTTCCGGGAGGTAATGGGGCACCCTTCACATATGCAGAGATAATGACTATTTCTGAAGGTGGTCGTGGAGGTAACTGGTCCCAAATAGGGTTCTCTACTATCACGTATGAAGCCCCTCGCTACAGACAAAGGACTAGTAACCCTTCTTTAATCACAAACTGGCGTGAGTTCTTAATAAGGGATTTGAACACTACCGTAGATGTTAATGGTTTTGTTAAGATTGCATCGCCTATAGTCAAACTAAAATCTGATGGTTCTTCTGAAGTTAATGACCAAGCCCAAGGAGTAACAACCGAAAGATTAGATGTTGGTGTTTACAAGATATCTGGGACTTTAGGGTTTAACTCGGATGCATCTTGGGGCGGTATCGAAGGTGGTTTTTCTATTCCACAAAACTCCAATGGGTTACCTCTTCTTTGGGTTGATTATGAAGTTGATGAAGAAGGTGATATTACTCTGAAAACTTACCATCGAACTCATGAGGGAGTTCCTTCTTTTGCCAGTAATGTAATAGAGGGTGTGACAGATGGAGAACCTATCGATATTCCTGTTGGAAGATGGATTGACCTACGTGTTGAAATGCCTTCTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
2692b92c6e112b8ab48b1e0eaa9d229d9993604ad6ea76b0d4515d337ebf4b4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6523
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of SGF2, a novel phage infecting Shigella flexneri Lu,H., Liu,X., Lu,M. and Liu,H. 2022-05-06 — GenBank