Protein

View in Explore
Genbank accession
YP_009999256.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,68
Protein sequence
MPVVWHCGFNGIVNNTMNQGQAGLFIDTNDTVMTSHAKDNNNLINNIFGRGGVGNQNGGLLPLITYYGRKWSNTAYGTSYVFGRVKPSFFDNSVPCLSTEQYQPSTNSDWWGGWQFRTDLCWPSAERQTTSWRMGFRIGRATHPTYQIPYQVYICPAAIQEANGQNLYAIPVVAGQTEKYVEVEWFADTKTLNIYQDDELISSRTNYTANDMSYGLVLMCEHYVGGTYSNTPFFGFELRDMYLQKIVSDADQRLGSSTKVYAFNPVTDDAVQFSRPDGYSSNAAVAVSPVQSGGATPTPSVPAAILGADVVGQQDLYNIDISKVSSRLASIEAVNVRTMARNPLLGSRQSAAIAKSGAMQIQSENTSTLEQGGLWRFNTLQMVSDPADGARWNLTKLAGLKVGTKFVA
Physico‐chemical
properties
protein length:408 AA
molecular weight: 44828,63850 Da
isoelectric point:5,85415
aromaticity:0,11029
hydropathy:-0,28922

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009999256.1
1 408
Domain Start End Length (AA) Confidence
N-terminal 1 52 52 0,0020
Central domain 53 251 200 0,2719
C-terminal 252 408 156 0,9246
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-52
Central
53-251
C-terminal
252-408

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SeWh-1
[NCBI] 		2419754 Uroviricota > Caudoviricetes > Casjensviridae > Chivirus SeWh1 >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009999256.1 [NCBI]
Genbank nucleotide accession
NC_053000 [NCBI]
CDS location
range 21922 -> 23148
strand -
CDS
ATGCCTGTAGTTTGGCACTGCGGTTTTAATGGCATCGTCAATAACACGATGAATCAAGGACAAGCGGGTCTATTTATCGACACTAATGATACAGTTATGACTAGTCATGCGAAGGATAACAATAATCTGATTAATAATATTTTCGGAAGGGGCGGTGTCGGAAACCAAAATGGCGGATTACTCCCGTTGATCACCTATTATGGCCGCAAATGGTCGAATACCGCATATGGGACATCTTATGTCTTCGGGCGCGTTAAGCCATCTTTCTTTGATAACTCCGTGCCATGCCTTAGTACCGAACAATATCAGCCCTCGACCAACTCCGACTGGTGGGGTGGCTGGCAGTTCCGTACTGATTTGTGCTGGCCGTCGGCGGAACGCCAGACGACGTCATGGCGTATGGGCTTCCGGATCGGTCGCGCAACACACCCAACATATCAGATCCCTTATCAGGTATACATCTGCCCGGCTGCGATTCAGGAAGCGAACGGGCAAAACCTGTATGCAATCCCGGTGGTAGCAGGCCAGACCGAAAAATACGTGGAGGTGGAATGGTTCGCCGACACCAAAACCCTCAACATCTATCAGGATGACGAGTTAATTTCGTCCCGTACAAACTACACGGCTAACGACATGTCATACGGCCTTGTTTTGATGTGCGAACATTACGTTGGCGGTACCTATAGCAACACGCCGTTCTTCGGTTTTGAACTGCGGGACATGTACCTCCAGAAAATCGTTTCAGACGCAGACCAACGCCTCGGGTCTTCGACGAAAGTATACGCGTTTAACCCTGTCACCGACGACGCCGTCCAGTTCTCGCGCCCGGACGGATATTCTTCAAACGCCGCCGTCGCAGTGTCGCCAGTACAAAGCGGCGGCGCAACCCCGACCCCGTCTGTTCCGGCGGCCATCTTGGGGGCGGACGTGGTTGGACAGCAAGACCTGTATAACATCGACATTTCTAAAGTCAGTTCTCGCCTTGCGTCGATCGAAGCGGTTAACGTCCGGACGATGGCCCGAAATCCGTTGCTTGGAAGTAGACAATCCGCCGCGATCGCCAAGTCCGGGGCCATGCAAATCCAAAGCGAGAACACCTCGACGCTAGAACAAGGCGGCCTGTGGCGTTTCAACACATTGCAAATGGTGTCTGACCCGGCGGACGGCGCACGTTGGAACCTTACAAAACTGGCCGGGCTTAAAGTCGGTACCAAATTCGTCGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dc01bfa0ad5e477fbdf3f116f0931d6eae1c993fe866aa131d90c0d30ca8ef77
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5505
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SeWh_1, Complete genome sequences of 3 novel enterobacteria, Pakpunavirus like phages Yuan,S., Ma,Y. and Liu,Q. 2020-07-27 — GenBank