Protein

View in Explore
Genbank accession
YP_009014994.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSSNTDIIALLSSEADKAVDQIIEDSKRLNIVVNGDGTAQATTEDGSLIPSVRKALLDNLYFKTPPLPWRNGGSVTEYNQLYTFTDSNGLTAWWYAPSATTSNPAVMTDDPANNKKFKVFLDRTNMADIYAPIQSPNFRGNPRTPTPAAGDSSQTIPNTQWVQTELDVLRQQIGEIGGDSDFENITVRNKTTTKDLDVSGKITSTGSAIDALNALLRVRQIELPSSASYVNFTTTAPFPVGVTRKTSLTPFEISTGTIRTDVANFNTLTAGDINNGGVSVDLKGNAAGDYLHLSGTTSDPVNDPKPQLIVDGIAEIGTLRVNNLEGFVANVDGQDIRPRSVTASEFVNSKNITATGTTTVKDLVITGTVTGLDVNVDGKDIRPNSVVTNNEVNVGTNLTVGVDATVTRNISVGGTTTVKDLVVTGTVTGIDLTVDGKDILPHSVTTTSLTVTGATTGTTAEFDKVTSDLFNIPPKPIALTSSEFTPDGTSSLYDILVDRNVLVKPPVGLFTGGVGGTILMYFTQDTTGGRTVTFSPEFVKIGDGDFDTSASGTTIVQLLYRGKDQVIDTVITSRR
Physico‐chemical
properties
protein length:575 AA
molecular weight: 61008,22450 Da
isoelectric point:4,60654
aromaticity:0,05913
hydropathy:-0,17704

Domains

Domains [InterPro]
DC_0062
STR
2–407
DC_0062 IPR058970
IPR058969
ATT
14–120
IPR058969 IPR058970
YP_009014994.1
1 575
Architecture
STR
ATT
STR
RBD
STR 2-13 | ATT 14-120 | STR 121-407 | RBD 484-565 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR9
[NCBI] 		1162290 Uroviricota > Caudoviricetes > Vequintavirinae > Certrevirus CR9 >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009014994.1 [NCBI]
Genbank nucleotide accession
NC_023717.1 [NCBI]
CDS location
range 28150 -> 29877
strand +
CDS
GTGTCATCAAATACTGACATCATCGCGTTGCTGAGTTCCGAGGCTGATAAAGCTGTTGATCAGATCATCGAAGACTCCAAGCGCCTCAACATCGTAGTCAACGGGGATGGGACCGCTCAGGCCACAACTGAAGATGGTAGCCTAATCCCCTCTGTCCGTAAAGCACTTTTGGACAACCTGTACTTCAAGACCCCGCCACTACCATGGCGTAATGGTGGTTCAGTCACCGAGTACAATCAGCTTTATACCTTCACCGACAGCAACGGCCTGACTGCCTGGTGGTATGCTCCATCAGCGACAACGTCAAATCCTGCGGTGATGACGGATGATCCTGCCAACAACAAAAAGTTCAAAGTCTTCCTTGACCGAACCAATATGGCAGACATCTACGCTCCGATCCAGTCTCCGAACTTCCGGGGTAACCCACGCACACCTACCCCGGCAGCGGGTGATAGCTCCCAGACCATCCCAAACACCCAGTGGGTGCAAACTGAACTGGATGTCCTTCGTCAGCAGATTGGTGAGATTGGGGGAGACAGTGATTTCGAGAACATTACGGTCCGCAATAAGACGACCACGAAAGATCTTGATGTCTCTGGCAAGATCACCAGCACCGGGTCAGCAATTGACGCACTGAACGCCCTGCTGCGTGTTCGTCAAATTGAGTTGCCATCTTCTGCATCTTATGTTAACTTCACCACTACGGCCCCGTTCCCTGTCGGGGTCACCCGTAAGACAAGCCTGACGCCGTTTGAGATTTCCACCGGGACAATCCGTACCGATGTGGCGAACTTCAATACGTTGACGGCTGGGGATATTAACAACGGGGGCGTATCTGTAGACCTGAAAGGGAATGCGGCGGGTGATTACCTGCACCTGTCAGGTACAACCAGCGATCCGGTTAACGATCCGAAGCCACAACTAATTGTTGATGGTATTGCTGAAATCGGAACCCTTCGTGTTAACAACCTTGAAGGTTTTGTTGCCAACGTCGATGGTCAGGATATCCGCCCTCGTTCTGTTACGGCATCTGAATTCGTCAACAGCAAGAACATCACCGCAACCGGGACGACGACGGTCAAAGACCTTGTTATTACCGGAACGGTTACTGGACTTGACGTCAATGTTGATGGTAAAGATATCCGCCCCAACTCTGTTGTGACAAACAACGAAGTTAACGTCGGCACAAACCTGACCGTGGGTGTTGACGCAACAGTAACTCGCAACATCTCCGTTGGTGGAACCACTACCGTCAAGGATCTTGTGGTCACTGGTACGGTTACAGGTATCGACCTGACAGTTGATGGGAAGGACATTCTCCCTCACTCCGTGACAACAACAAGCCTGACAGTTACCGGAGCAACAACCGGGACGACGGCGGAATTTGATAAGGTGACTTCAGACCTCTTCAACATCCCACCAAAACCGATCGCCCTGACAAGCTCTGAGTTTACTCCGGATGGCACGTCAAGCCTTTATGATATTCTCGTCGATCGTAACGTCCTTGTCAAGCCCCCTGTCGGGTTGTTTACCGGGGGCGTCGGCGGTACAATCCTAATGTACTTCACTCAGGACACAACCGGGGGCCGTACTGTTACGTTCAGCCCGGAATTCGTCAAGATCGGCGACGGTGATTTCGACACGTCCGCAAGCGGAACCACTATCGTTCAACTGCTGTATCGTGGTAAAGACCAAGTCATTGACACCGTCATTACCAGCCGCAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54bc244fcb9ce0563cc42df4200b211a0169caba189031fa3c4d1502817a2785
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6333
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR9 Shin,H., Lee,J.-H., Kim,Y. and Ryu,S. 2012-06 — GenBank