Protein

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Genbank accession
AFB84006.1 [GenBank]
Protein name
minor tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,63
Protein sequence
MAYTLLKECTVVLVYKGVGYHFDALTQLDFSQTFNKTSGSRKTLHSRRAKPYTFANSKNSATFSLSILGTQSFAEGVLFELAGLTKIHNSVYSYEDNLNISPEICDIFLVTTEGVYKVKTAALESLSISLSLSEALTFETSFTASSIDKVPSIDLSAGMVEQGTPLKPTPIQYKLDNEIRNSIINAGISIQQTISWREDRSLHDVGSLYIPKHPVLTDRSFGINTNVYLNTIHPTPDKSHYSNLELYKSGLLCSMKDALVTHRVAPADVFTEAHDIRVTDQTNKIIVEYGGYLV
Physico‐chemical
properties
protein length:294 AA
molecular weight: 32577,55250 Da
isoelectric point:6,13585
aromaticity:0,09184
hydropathy:-0,10578

Domains

Domains [InterPro]
IPR056389
ATT
1–292
IPR056389
AFB84006.1
1 294
Architecture
ATT
ATT 1-292 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pVp-1
[NCBI] 		1150989 Uroviricota > Caudoviricetes > Demerecviridae > Vipunavirus > Vipunavirus pVp1
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFB84006.1 [NCBI]
Genbank nucleotide accession
JQ340389 [NCBI]
CDS location
range 94618 -> 95502
strand +
CDS
ATGGCATACACTCTACTAAAAGAGTGCACCGTTGTTTTAGTTTACAAAGGGGTAGGGTATCATTTCGATGCCCTAACCCAACTTGATTTTAGTCAGACATTTAATAAAACTTCTGGTTCAAGAAAAACATTGCACTCAAGACGAGCAAAACCTTATACTTTTGCTAATTCTAAAAATTCGGCTACGTTCAGTCTAAGCATTTTAGGTACTCAAAGCTTTGCAGAAGGTGTTTTGTTTGAACTAGCAGGATTAACCAAAATACATAATAGCGTGTATAGTTATGAGGATAATTTAAACATATCTCCAGAGATATGTGACATATTCTTAGTTACTACTGAAGGGGTATACAAAGTAAAAACAGCAGCACTAGAGTCTTTAAGTATATCACTGTCGTTAAGTGAAGCACTTACTTTTGAAACCTCGTTCACTGCTAGCTCTATAGATAAGGTTCCTAGTATTGATTTAAGTGCAGGAATGGTAGAGCAAGGTACACCCCTAAAACCTACACCTATACAATATAAATTAGATAATGAGATAAGAAATTCTATTATAAATGCAGGAATCTCGATACAACAAACTATAAGTTGGAGAGAAGACAGATCACTTCATGATGTAGGTAGTTTATACATCCCTAAACACCCTGTACTAACAGACAGAAGTTTTGGTATTAATACTAACGTATACTTAAATACCATACACCCAACTCCTGACAAATCTCACTATTCTAATTTAGAGTTATATAAATCAGGTTTACTATGCTCTATGAAGGATGCATTAGTAACCCATAGAGTTGCCCCTGCTGACGTTTTTACTGAAGCACATGATATAAGGGTAACAGATCAAACAAATAAAATAATTGTGGAATATGGAGGATATTTAGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0b0b8d398a016843ced9849ebabeeecfc712ff844de12bf0f2ffa8607f64788
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7968
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of a Novel Marine Siphovirus, pVp-1, Infecting Vibrio parahaemolyticus Kim,J.H., Jun,J.W., Choresca,C.H., Shin,S.P., Han,J.E. and Park,S.C. 2012 22628398 GenBank