Protein

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Genbank accession
YP_006218724.1 [GenBank]
Protein name
pyocin knob domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,75
Protein sequence
MNDVLRLAKAVRKINTIFSTFKDSIYTKNEADNKFINQELMENGLYVIKNKNIENMNDAIQPGVYSISATGVENKPLPNSGSLFVNKDPGGIRQFFQTERTIFIRQFGGIPPSWTDWKELGLKGPKGDTGPIGPQGPKGDTPDISNLVTKTQYTNDLNKKIDKTAFNAIGQHISFNGITIHIQKSNTVVTCNVEGIFKKGKANGWHEVSTRAETSYRPVNMIIKVPLTINIGNTIQINKYAALQIETSGRIMIRVYGLQNDDVEFGGSATWIR
Physico‐chemical
properties
protein length:273 AA
molecular weight: 30352,21810 Da
isoelectric point:9,42059
aromaticity:0,08425
hydropathy:-0,42418

Domains

Domains [InterPro]
DC_1143
STR
6–128
DC_1143 DC_1452
cd19958
STR
54–120
cd19958
YP_006218724.1
1 273
Architecture
STR
RBD
STR 6-128 | RBD 160-273
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006218724.1
1 273
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,9838
Central domain 151 262 113 0,0034
C-terminal 263 273 10 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-262
C-terminal
263-273

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage EF62phi
[NCBI] 		977801 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Enterococcus faecalis 62
[NCBI] 		936153 Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006218724.1 [NCBI]
Genbank nucleotide accession
NC_017732 [NCBI]
CDS location
range 14917 -> 15738
strand +
CDS
GTGAACGATGTGTTGAGGTTAGCAAAAGCAGTAAGAAAAATAAATACAATTTTTTCTACGTTTAAAGATAGTATTTATACCAAAAATGAAGCAGACAATAAATTCATAAACCAAGAGTTGATGGAAAATGGATTGTATGTAATTAAAAATAAAAATATTGAAAATATGAATGATGCTATTCAACCAGGTGTTTATTCAATTTCAGCTACAGGAGTTGAAAATAAACCTTTACCTAACTCGGGTTCTCTATTTGTCAATAAAGATCCAGGAGGAATCAGACAGTTCTTTCAGACGGAGAGAACAATTTTTATTCGACAATTCGGGGGAATTCCTCCGTCCTGGACGGATTGGAAAGAATTAGGCTTAAAAGGTCCAAAAGGTGATACTGGTCCGATTGGTCCACAGGGACCAAAGGGAGATACACCTGATATAAGCAATTTAGTAACAAAAACACAGTATACAAATGATTTGAATAAAAAGATTGATAAAACAGCATTTAATGCTATAGGGCAACATATTTCTTTTAACGGAATCACTATACACATTCAAAAATCGAATACAGTTGTTACATGTAATGTCGAAGGAATATTTAAAAAAGGGAAAGCCAACGGATGGCATGAGGTGTCGACAAGAGCAGAAACAAGTTATAGACCAGTTAACATGATTATTAAAGTACCTTTAACAATAAATATAGGGAATACCATTCAAATAAATAAGTATGCAGCATTACAAATAGAAACATCTGGTCGAATCATGATTCGAGTTTATGGACTTCAAAATGACGATGTAGAGTTTGGAGGGAGTGCAACATGGATAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
297ff082e3b64c5a6afac456b5c4e7bec1264af955247b2e34b71c9856ef90d4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8673
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the commensal Enterococcus faecalis 62 isolated from a healthy Norwegian infant Brede,D.A., Snipen,L.G., Ussery,D.W., Nederbragt,A.J. and Nes,I.F. — — GenBank