Protein

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Genbank accession
AKU42647.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLSPNEKYPGRVAVDPNYQDGKFKDSDPSTANNGSPLKAIDRNEQLALQEAVMDAAGFEYSGVADTPQNSQMFKAYKAALSNGANLLSNHNFIIASPDDITHPNATPETYAAGTQIFSGVYAGDSGCTITFIDGRVNCTAGDYQFKVANANGLDRVPVFASSVSDYDGKPKTTGVSHALVGDEYVVTVAPAAGDVFSVKFEQGSVATGHDVSEQITTTTLASYTDIVYKASGGNSAVQNMIAGITIAASVGDICTADGSLYQRVSIGGNLDDFELLGSLSKVVSVGSGGDYQTINDAIKASQEKPKVLESRNLIQINLLSGFAMSEQVIIFNSDLGHIIITSDDPIVSINRSALNSSKLSYLSQSNFPAFGIMENSVGPVISCLFQMDSSGDGTNRTGILVNSNSFIEVRPGCGVTDVGHRGLHLSSSTAVANSAVFDRANDVGVRVGNQSKIWADNISAEDAGQNGCSVDAGGIASIISAKFNRALGVSCLNVSAGATATFTNGEASDGSIGISTDGGDVRFEGATITNNTDGNVVATDGSTLKGKLANLAGSTNGSGIKASNGCQVDIHGADTSDNAVNGAWFLTGTHGDVTGVTSNDNGNNALLCQSSSMSARSVTTGGSGGLADVRVLEGGTIAFSGTGTTNITVNTITPNGIIFN
Physico‐chemical
properties
protein length:661 AA
molecular weight: 67832,85590 Da
isoelectric point:4,55078
aromaticity:0,06051
hydropathy:-0,08018

Domains

Domains [InterPro]
DC_1478
STR
157–661
DC_1478
AKU42647.1
1 661
Architecture
STR
STR 157-661
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AKU42647.1
1 661
Domain Start End Length (AA) Confidence
N-terminal 1 123 123 0,6802
Central domain 124 622 500 0,7122
C-terminal 623 661 38 0,8037
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-123
Central
124-622
C-terminal
623-661

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage H188
[NCBI] 		1673892 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio kanaloae
[NCBI] 		170673 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AKU42647.1 [NCBI]
Genbank nucleotide accession
KT160311.1 [NCBI]
CDS location
range 42784 -> 44769
strand -
CDS
ATGTCTTTATCACCTAATGAGAAATACCCAGGAAGAGTGGCCGTTGATCCAAACTACCAAGACGGCAAATTCAAGGATAGCGATCCATCAACAGCGAATAACGGATCGCCCCTCAAGGCTATAGACCGCAACGAACAACTTGCATTGCAAGAAGCTGTGATGGATGCTGCTGGCTTTGAGTATAGTGGTGTTGCTGATACGCCACAGAACTCTCAAATGTTTAAGGCCTATAAAGCAGCGCTAAGTAATGGCGCGAACCTGCTATCTAACCATAACTTTATCATTGCATCGCCAGATGATATCACACACCCTAACGCAACGCCTGAAACATACGCAGCAGGTACGCAGATTTTTAGCGGTGTGTACGCAGGTGATAGTGGTTGTACGATTACGTTTATTGATGGTCGAGTTAACTGTACGGCAGGTGATTATCAATTTAAAGTTGCCAATGCTAACGGGCTTGATCGCGTTCCTGTGTTTGCGTCGAGCGTTTCTGATTACGATGGTAAGCCAAAAACTACAGGCGTTAGTCATGCGTTAGTCGGCGATGAGTATGTAGTTACCGTTGCACCTGCTGCTGGTGATGTGTTTAGTGTGAAGTTTGAGCAGGGTAGTGTGGCGACGGGGCATGATGTCAGTGAGCAAATAACGACCACGACTTTAGCAAGTTACACCGACATAGTTTACAAAGCTTCAGGTGGTAATTCTGCTGTTCAGAATATGATTGCTGGAATTACTATTGCTGCAAGTGTTGGTGATATTTGCACGGCTGATGGTTCGCTATATCAAAGGGTGTCGATCGGTGGAAATCTTGATGATTTTGAATTGCTAGGGTCTCTAAGTAAGGTTGTAAGCGTAGGTTCTGGAGGTGACTACCAAACAATAAATGATGCAATAAAAGCGTCACAAGAGAAACCGAAAGTTTTAGAATCCAGAAATTTAATTCAAATAAACCTACTGTCAGGTTTCGCTATGTCAGAGCAAGTTATTATATTTAATTCAGATTTGGGACATATAATAATAACCTCAGATGACCCGATTGTCTCAATCAATAGGAGCGCATTAAATAGCTCTAAGTTAAGTTACTTATCACAATCTAATTTCCCTGCATTTGGAATTATGGAAAATAGCGTAGGACCGGTAATTTCATGCTTGTTTCAGATGGACTCATCCGGCGATGGGACTAATCGTACTGGAATACTGGTAAATTCAAATAGCTTTATTGAGGTAAGACCTGGGTGCGGCGTTACTGATGTTGGACATCGAGGGCTTCATTTATCATCAAGTACCGCTGTTGCAAACTCTGCCGTTTTTGATAGGGCTAACGATGTAGGTGTGAGGGTCGGTAATCAATCAAAGATATGGGCTGACAACATAAGCGCCGAGGATGCGGGACAAAATGGTTGCTCTGTTGATGCAGGGGGGATCGCGTCAATAATATCAGCTAAATTCAATAGAGCGCTTGGCGTATCTTGCCTTAATGTGTCAGCAGGCGCTACAGCTACTTTTACAAACGGTGAAGCTAGTGACGGTAGTATCGGGATCTCAACTGACGGAGGTGATGTTCGATTTGAAGGTGCTACAATTACAAACAACACAGACGGTAATGTAGTGGCAACAGATGGATCAACTTTAAAAGGAAAGCTAGCTAATCTTGCTGGATCTACAAACGGATCTGGAATTAAAGCTTCAAACGGATGTCAAGTGGACATTCACGGGGCGGACACTTCAGACAATGCGGTGAACGGCGCATGGTTCCTTACAGGTACGCATGGCGATGTTACAGGCGTTACATCAAATGATAACGGTAATAACGCACTTTTATGTCAATCATCATCCATGTCTGCTAGATCTGTTACAACTGGCGGGTCTGGTGGCTTGGCTGATGTTAGAGTTCTTGAGGGTGGAACGATTGCATTTTCTGGAACCGGAACTACAAACATCACCGTAAATACCATCACACCAAACGGTATAATTTTTAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
eab4b1d4c5c8857af82e05e3bfa4c42ffeb7d1298368cc87d82f3a46056a8792
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7547
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Sequence of Bacteriophage H188: A Novel Vibrio kanaloae Phage Isolated from Yellow Sea Li,Y., Wang,M., Liu,Q., Song,X., Wang,D., Ma,Y., Shao,H. and Jiang,Y. 2016 26858130 GenBank