Protein

View in Explore
Genbank accession
YP_009006074.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALVDVVRAGGYSIEYPQFSSMAKLKAFPHSEDGQLVRLLSWHEGVGLGGGLFKVSTSSTATGNDGTVVVASNGVRLLRVVNGPIWADMFGALPNSDIDSKPAVAAAYAYAASVNTDLYIGVAAYKFKGSTPINVDPSRAGIIGYQGKVRIDCSEFTGSVVFSINSSYSYTPAAYYNNLSPALQGLYVFGAKTSGVDGLLVGRETVGSDKSYNGQTEVRECTFDKFDRNIRMGHNSWRFVFYKVNSLNALNPNGILYVPAGLDDSGEILSFYHCQFFDGAGSNIRLSCSSYTMVFNTCSFLNITFFVDSASSATVTCNGCNFENPGSASTRRYVDISAGHTNVFNIIGGSIVTNGNPGQTQALLYVSTDNLLNLVGVTVPYGGHYQQEQELGYHAFIGGAGTVTTSGVMLQLRNGAGTCPLHSSLSTFSNWDFGYGNLDAWTVDKGTGTSSVVEYLANAGPKGTEGAMRVAPVSVGTNVSQVQAVTNPGMFSMSCMVNIATTPGNAGQVSIGFLDAAGNRLPGGVSANLGTTTGWKVIGKNTLRGKVPIGAKQIRVNIQTVAGADVKYAYLLCNAVK
Physico‐chemical
properties
protein length:577 AA
molecular weight: 60826,71470 Da
isoelectric point:7,52289
aromaticity:0,10052
hydropathy:0,03865

Domains

Domains [InterPro]
IPR059934
RBD
18–81
IPR059934
DC_0903
STR
20–571
DC_0903
YP_009006074.1
1 577
Architecture
STR
STR 18-571 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009006074.1
1 577
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,9867
Central domain 99 418 321 0,9884
C-terminal 419 577 158 0,9914
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-418
C-terminal
419-577

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage F19
[NCBI] 		1416011 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Drulisvirus
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009006074.1 [NCBI]
Genbank nucleotide accession
NC_023567 [NCBI]
CDS location
range 41818 -> 43551
strand +
CDS
ATGGCACTAGTAGATGTAGTGAGGGCTGGGGGATATTCTATTGAGTACCCGCAATTCTCCAGTATGGCTAAGCTAAAAGCATTCCCACACTCTGAGGACGGGCAACTTGTTAGGTTGTTGTCTTGGCATGAGGGGGTTGGTTTAGGTGGTGGGCTGTTCAAGGTCAGCACCAGCAGCACCGCTACAGGTAACGATGGCACGGTAGTAGTGGCTAGTAATGGAGTGCGGCTGCTTCGAGTAGTAAACGGACCTATCTGGGCAGATATGTTTGGTGCACTACCGAATTCAGATATAGACAGTAAGCCCGCAGTGGCTGCGGCTTATGCGTACGCTGCTTCTGTGAATACGGACCTGTATATCGGGGTGGCGGCTTACAAATTCAAGGGGAGCACTCCAATTAATGTAGATCCCTCCAGGGCCGGTATTATTGGTTATCAAGGTAAGGTGCGCATTGACTGTTCTGAGTTTACTGGTTCGGTTGTGTTTTCTATAAATAGCAGCTATAGCTATACCCCCGCAGCCTACTACAACAACCTTAGCCCAGCCCTGCAGGGGCTGTACGTGTTTGGTGCTAAAACGTCCGGAGTAGACGGGCTACTGGTTGGCAGGGAAACAGTGGGATCGGACAAGAGCTATAACGGGCAGACCGAGGTTCGTGAGTGCACGTTCGATAAGTTCGACCGCAACATCCGAATGGGGCACAACTCTTGGCGCTTTGTGTTCTACAAAGTAAACAGCCTAAACGCCCTCAACCCTAACGGGATATTGTATGTGCCTGCTGGACTAGATGACTCTGGAGAGATTCTGTCGTTCTACCACTGCCAGTTCTTCGATGGCGCAGGTAGTAATATCCGATTATCTTGCTCCTCATACACTATGGTGTTTAATACCTGCTCGTTCCTGAACATCACGTTCTTTGTGGATTCGGCGAGTAGTGCGACAGTAACCTGTAACGGATGCAACTTCGAGAACCCTGGAAGTGCTAGTACCCGTAGATACGTTGACATTAGTGCTGGGCACACTAACGTATTCAACATTATCGGGGGCAGTATAGTTACAAACGGCAACCCTGGACAGACTCAGGCGCTTCTGTATGTCTCTACCGACAACCTACTGAACCTTGTAGGTGTAACTGTTCCTTACGGCGGGCACTACCAGCAGGAGCAGGAGCTCGGGTATCACGCATTCATCGGAGGGGCCGGTACAGTCACAACCTCTGGGGTTATGCTGCAACTACGCAACGGGGCGGGTACGTGTCCTTTGCACTCCAGTCTTAGCACGTTCAGTAACTGGGATTTTGGTTATGGGAACCTGGATGCTTGGACGGTAGATAAGGGGACTGGTACATCCTCTGTGGTAGAGTATCTGGCTAATGCTGGACCTAAAGGTACAGAGGGAGCTATGCGAGTTGCTCCTGTAAGTGTCGGTACCAACGTATCACAAGTACAGGCAGTAACTAACCCCGGCATGTTCAGTATGTCCTGCATGGTGAACATTGCGACGACCCCCGGTAACGCGGGGCAGGTATCTATTGGGTTCTTGGATGCTGCCGGTAACCGTCTACCTGGTGGGGTATCAGCTAACCTGGGCACCACCACTGGTTGGAAGGTAATCGGCAAGAACACCTTGAGGGGTAAAGTCCCAATAGGTGCAAAGCAGATTCGTGTGAACATTCAGACCGTGGCCGGTGCAGACGTTAAGTACGCGTACTTGCTGTGCAACGCGGTCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
32d92e36b2518b2a3ece12db9b59f789b7f68cdbee1613229dbbf9fdb79a8725
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8355
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the novel phage F19, a potential antibacterial agent against Klebsiella pneumoniae-induced septicemia in mice Chen,S.J., Jin,J., Wang,S.W., Li,Z.J., Zhang,G., Wang,X.T., Li,Y.H., Wang,S.M. and Wang,J. 2022-07-05 — GenBank