Protein

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Genbank accession
QPZ53538.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MAYIGKSPVIGNFVKLDAITAVNGQAAYTMQNGGSNFTDYESVNQFLVSLNGTIQAPTDSFTVSGSTLTFASNLSTGDVIDFIMVFGNSLSAGTPTDATVSTAKIVDSAVTTAKINANAVTSAKLNNDIISGATELATTPADTDEFLVSDAGTIKRVDYSHIKGGGITMVDNWRLTTSFSTGDVNPLSSNLERNDTASPSFGYYGSQMSVSSGIWTFPSTGIYRVDAVAQFSLPSGNQYNGVEIHGTANNSSYITLAVNYNHIVNVTNPTYSQTVCNCMLDITDTANQKIKFRIINANSATTVLGDSTYDITYFRFTRLGDT
Physico‐chemical
properties
protein length:322 AA
molecular weight: 34198,43200 Da
isoelectric point:4,56988
aromaticity:0,09317
hydropathy:-0,05093

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53538.1
1 322
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,8609
Central domain 143 311 170 0,0295
C-terminal 312 322 10 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-311
C-terminal
312-322

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC035P
[NCBI] 		2796521 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53538.1 [NCBI]
Genbank nucleotide accession
MW273923 [NCBI]
CDS location
range 14233 -> 15201
strand -
CDS
ATGGCATATATAGGTAAGTCACCAGTAATAGGAAACTTTGTAAAGCTAGACGCAATAACTGCTGTTAATGGTCAAGCTGCGTACACTATGCAAAATGGTGGCTCAAACTTTACAGACTATGAAAGTGTAAATCAATTTTTAGTGAGCTTAAATGGAACTATCCAAGCTCCAACAGACAGTTTTACAGTAAGTGGTTCTACACTTACATTTGCATCTAACCTATCTACAGGAGATGTTATAGATTTTATAATGGTGTTTGGTAATTCCTTATCTGCTGGAACACCTACAGATGCTACAGTTTCTACTGCTAAGATAGTTGATAGTGCAGTTACTACTGCAAAAATAAATGCAAATGCAGTTACTTCAGCAAAATTAAATAATGATATTATTTCTGGTGCTACAGAACTTGCTACAACTCCAGCAGACACAGACGAATTTTTAGTATCAGATGCTGGTACAATCAAAAGAGTAGATTATAGTCATATTAAAGGTGGTGGAATTACAATGGTAGATAATTGGAGACTTACTACATCATTTTCAACAGGAGACGTAAATCCTCTTTCTTCAAATTTAGAGAGAAACGATACTGCGTCACCATCTTTTGGTTACTATGGTTCTCAAATGTCAGTAAGTTCTGGTATTTGGACTTTTCCATCTACAGGAATTTATAGAGTTGATGCTGTTGCTCAATTTTCTCTGCCTTCAGGTAATCAATATAATGGTGTTGAAATACATGGTACAGCAAATAATTCTAGTTATATAACATTAGCTGTTAATTATAATCATATAGTAAATGTTACAAATCCAACATATTCTCAAACTGTATGTAACTGTATGCTTGATATAACAGATACTGCAAATCAAAAAATTAAATTTAGAATAATAAATGCAAATTCAGCAACAACAGTTTTAGGCGACAGTACATATGACATTACTTATTTTAGATTTACAAGATTAGGAGATACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
506cee6a4c0e0ded515d8c18d8ab9695ee260a3bb09d8f3fc1de44cc83fda746
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8209
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank