Protein

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Genbank accession
YP_009817554.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MALSAQTYQGDGSNTDFVLDFTLGYISESHIHVYVDDVEIPQNTLQFILGGGSVRLPTAPTLGSEVLVRRIVPNDKLLHDYENGSLVIESNLDESNLQSIMLQHEAVDGFSTGIYGDINFFTEISDSPEDTAESPRGVEQVTITGLASLAEDQRDEFETTFNAQFVYKRIGNLSDYSGMTLTEEDKLNSYQYPDDSGNWYAPLQGQAFPYVLPIDPTVSDSGMVLTSTVGIYRGIWPDTGGIANKGDTYQTQVSNIPTGKYFTALQDTITAPVGDDVNWREVVSVASISNYTNLAYSSVADMISGNPIIANVNDKCTTPGTSWTRISSNNGDIRDFRYEEKISAADFGNITRGKGSIADSIIVSGQIISAITNYTSVAGPAIFTIPSDVYFDAQTLFAAIPAGSGIVASTQEDGTSYAGYTGKASWSAYGDTQDNDSRHVIESGHNALLNLFNAQLPNTGVGGVGQSSSSLDGRCSITAQAGYEEVNGRQVRAKTSRLQRYQTGGVGPIHWGLQHPTETGVGTRTLFDFDSNGNASFGGYATKDEYNLLVYPQNTNAPALDKRTTIAMRNVQSSGNGCRVEMVARNAANTNSFAINYDGNDLILGDYESLEGGYAGNIDRYILGRTVAPGDQSRVVIYDDDNRGSIFARNTLSSGLTRTMLLLQAASNTAANYNWCSFFDTFNSISRFSVDGLGNVTANSYTPFTGCHLFFSSRDIEVGTPVDLVDGNQVDYITYPDPYGEESSTVQLNGTISPSGALSKLCVGLVHSSREMEGGFMIMVAAAGDNRSGELKGFKVNDEGGKVQAGDILCTSSTVGELMKIPDNSEESVVRFKSLSTPDNSNVVYGYF
Physico‐chemical
properties
protein length:848 AA
molecular weight: 91296,28840 Da
isoelectric point:4,42085
aromaticity:0,09316
hydropathy:-0,28066

Domains

Domains [InterPro]
DC_1894
ATT
1–199
DC_1894 DC_0090
IPR005604
ATT
5–111
IPR005604
YP_009817554.1
1 848
Architecture
ATT
STR
ATT 1-199 | STR 225-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009817554.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 336 336 0,9903
Central domain 337 535 200 0,5741
C-terminal 536 848 312 0,8423
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-336
Central
337-535
C-terminal
536-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.204.O._10N.222.46.F12
[NCBI] 		1881263 Uroviricota > Caudoviricetes > Autographivirales > Cyclitvirus cyclit >
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009817554.1 [NCBI]
Genbank nucleotide accession
NC_048123.1 [NCBI]
CDS location
range 4754 -> 7300
strand -
CDS
ATGGCTTTATCAGCTCAGACTTATCAAGGCGACGGTAGTAACACAGACTTCGTACTTGATTTTACATTAGGTTATATCTCCGAGTCCCATATTCACGTATATGTGGATGATGTAGAAATTCCGCAGAATACTTTACAGTTTATCTTAGGTGGTGGTTCTGTACGTTTACCTACAGCACCTACTTTAGGTTCAGAGGTACTAGTTCGTCGTATCGTGCCAAACGATAAATTACTTCATGACTACGAAAATGGTTCTCTAGTAATTGAATCTAACCTAGACGAATCCAACCTACAAAGTATTATGCTTCAGCATGAGGCGGTAGACGGTTTTAGTACGGGTATCTACGGAGACATTAACTTCTTCACAGAGATTTCAGATTCTCCTGAAGATACTGCTGAGAGTCCTCGTGGTGTAGAGCAGGTTACTATTACGGGATTGGCTTCTTTGGCAGAGGACCAACGTGACGAGTTTGAGACTACTTTCAACGCTCAGTTCGTATATAAACGCATAGGCAACCTGTCAGACTATTCTGGCATGACTCTTACGGAAGAAGATAAGCTTAACTCTTATCAATATCCTGACGACTCGGGTAATTGGTATGCCCCACTACAAGGACAAGCTTTTCCTTACGTATTACCTATTGACCCTACGGTCTCTGACAGTGGTATGGTACTTACTTCAACTGTAGGTATATATCGAGGAATATGGCCCGACACTGGCGGTATTGCTAACAAAGGCGACACCTATCAAACTCAAGTAAGTAACATACCAACAGGGAAATACTTTACAGCGCTGCAAGACACAATAACTGCTCCAGTTGGTGATGATGTGAACTGGCGCGAGGTTGTTAGTGTTGCCAGTATTTCAAACTACACGAACCTAGCATACTCTAGCGTTGCTGATATGATTTCTGGAAATCCTATCATCGCCAACGTTAATGATAAGTGTACAACCCCGGGTACGTCATGGACTAGAATATCATCCAATAATGGCGACATCCGTGACTTTCGGTATGAGGAAAAAATCAGCGCGGCAGATTTTGGAAATATAACGAGAGGCAAAGGAAGCATAGCGGATTCAATTATTGTCTCCGGCCAGATAATCTCAGCAATCACAAACTATACTTCTGTAGCGGGGCCTGCAATATTTACAATTCCCTCTGATGTATATTTTGACGCTCAGACTCTATTCGCTGCAATCCCTGCGGGCTCTGGCATAGTGGCAAGTACGCAAGAAGATGGTACAAGTTACGCAGGATATACTGGTAAAGCCTCTTGGTCAGCATATGGTGACACTCAAGATAATGACTCCCGTCACGTAATAGAGTCTGGTCATAACGCATTGCTTAACCTGTTTAACGCTCAGTTGCCAAATACTGGCGTTGGCGGGGTTGGTCAATCAAGTAGCTCTCTAGACGGGCGATGTTCTATTACCGCACAGGCTGGTTATGAAGAGGTAAACGGTAGGCAGGTAAGAGCCAAAACATCAAGGCTTCAGCGGTATCAAACTGGTGGTGTAGGGCCTATACATTGGGGCTTGCAACACCCAACTGAAACTGGGGTTGGAACTAGAACATTGTTTGATTTTGACTCTAACGGTAATGCATCGTTCGGTGGGTATGCTACCAAGGATGAATATAACCTTTTAGTATATCCACAAAACACAAACGCGCCAGCGCTAGATAAGCGTACCACTATTGCAATGCGTAATGTTCAGTCATCTGGTAACGGGTGTCGAGTTGAAATGGTAGCTAGAAATGCAGCAAACACAAATTCCTTTGCAATTAATTACGATGGCAACGACCTAATTCTGGGTGACTATGAGTCTCTAGAGGGTGGGTATGCAGGAAACATAGATAGATACATTCTAGGTAGAACTGTTGCACCCGGAGACCAGTCGAGAGTTGTTATTTATGATGATGATAATAGAGGGTCAATATTTGCTAGGAACACACTTTCAAGCGGCTTGACTAGGACAATGCTATTACTTCAGGCAGCAAGTAATACTGCTGCTAATTACAACTGGTGTAGCTTCTTTGATACATTCAACAGCATATCCCGCTTTTCTGTTGACGGGCTTGGTAACGTGACAGCAAATAGTTATACACCTTTTACAGGTTGTCACTTGTTCTTTTCAAGTAGAGATATTGAAGTGGGAACTCCTGTAGATTTGGTTGACGGAAATCAGGTTGATTATATAACCTATCCAGACCCCTATGGTGAGGAATCCTCAACCGTACAACTTAACGGTACTATTTCACCAAGCGGCGCACTGTCTAAGTTATGTGTAGGCTTAGTTCACTCATCAAGAGAGATGGAAGGCGGGTTCATGATAATGGTAGCGGCTGCGGGTGATAACAGGTCTGGAGAGCTAAAAGGATTTAAGGTTAACGACGAGGGAGGTAAAGTACAAGCTGGTGATATCCTTTGCACCTCTTCTACCGTAGGTGAGTTAATGAAGATACCGGACAACTCTGAAGAGTCAGTTGTAAGGTTTAAATCCCTATCAACTCCCGATAATTCTAATGTGGTGTACGGCTACTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
df4c03ecacd878d1b8d8c09a4c2ddcfbe88836922cc004ff38ca1d477d474199
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5465
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank