Protein

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Genbank accession

AAP76072.1 [GenBank]

Protein name

gp12 Short tail fibers

RBP type

Evidence RBPdetect

Probability 0,90

Protein sequence

MSNNTYQHVSNESVYVEFDPTGSNFDSSITNVQAALASISAYGVKGVPDASEAEKGVIQLATEQEVLDGFNSTKAVTPATLNARLQYPNASETQYGVTKYATQEEAIAGTLDTVSITPLKLNQTIDNTFSTRYSTETTNGVIKIATQTAALAGSDDTTAMTPLKTQQLAIKLISQIAPNNDPASESITGVVRLATVAQTRQGTLREGYAISPYTFMNSVATQEYKGVIRLGTQAEINSNLGDVAVTGETLNGRGATGSMRGVVKLTTQAGVAPEGDSSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIQMFAGDSAPPGWVLCHGGTISGDQFPDYRNVVGTRFGGDWNNPGIPDMRGLFVRGAGTGSHILNNRGQDGYGKDRLGVGCDGMHVGGVQAQQMSYHKHAGGWGEFQRHEAPFGASVYQGYLGTRKYSDWDNASYFTNDGFELGGHRDATGTLNREGLIGYETRPWNISLNYIIKVHY

Physico‐chemical properties

protein length:	516 AA
molecular weight:	55096,18220 Da
isoelectric point:	5,43065
aromaticity:	0,08140
hydropathy:	-0,39903

Domains

Domains [InterPro]

DC_0176
STR
1–437

DC_0176

IPR015173
STR
246–324

IPR015173 IPR037053 IPR044916

SSF69349
STR
246–346

SSF69349 IPR027448

G3DSA:2.10.280.10
Unmapped
246–286

G3DSA:2.10.280.10 SSF88874

IPR011083
ATT
337–392

IPR011083

AAP76072.1

1 516

Architecture

STR

ATT

STR

STR 1-323 | ATT 324-392 | STR 393-514 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0176	STR	DC_0176	1	437	Novel HMM	DC_0176	Central	Low	Positional only	613 proteins / 613 hits
IPR015173	STR	DC_0719	246	324	InterPro cluster	Bacteriophage T4, Gp12	Central	Low	Positional only	349 proteins / 349 hits
SSF69349	STR	SSF69349	246	346	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
G3DSA:2.10.280.10	Unmapped	-	246	286	Gene3D	None	-	-	-	-
IPR037053	ATT	IPR037053	324	388	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	330	514	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	337	392	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
IPR044916	STR	IPR044916	389	507	Merged direct domain	Short tail fibre protein, C-terminal superfamily	Central	Low	Positional only	2 proteins / 2 hits
IPR027448	RBD	DC_0877	424	514	InterPro cluster	Short tail fibre protein, C-terminal	C-terminal	High	Text match	424 proteins / 427 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage RB69 [NCBI]	12353	Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Mosigvirus
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

AAP76072.1 [NCBI]

Genbank nucleotide accession

AY303349 [NCBI]

CDS location

range 93278 -> 94828
strand +

CDS

ATGAGTAACAATACATATCAACACGTTTCGAACGAATCAGTATATGTTGAATTTGACCCTACCGGGTCAAATTTTGATAGTTCAATAACCAATGTCCAGGCAGCCTTAGCCTCAATTAGCGCATATGGTGTTAAAGGTGTTCCGGACGCAAGCGAAGCAGAAAAAGGTGTAATTCAATTAGCGACAGAACAAGAAGTTCTTGATGGATTTAATAGTACTAAAGCCGTTACACCCGCCACATTAAATGCAAGACTTCAGTATCCGAACGCGTCAGAAACACAGTACGGCGTAACTAAATATGCAACACAAGAGGAGGCCATTGCTGGCACTTTAGACACTGTTTCTATTACTCCGCTTAAATTAAACCAAACTATTGATAACACGTTCTCTACTCGTTATTCAACAGAAACAACTAACGGTGTTATTAAAATTGCAACTCAAACCGCTGCACTTGCCGGGTCTGATGACACCACAGCAATGACTCCGCTTAAAACGCAGCAATTAGCAATAAAATTAATTTCTCAAATAGCTCCTAATAACGACCCGGCTTCAGAATCTATTACCGGTGTTGTGCGTTTAGCTACTGTGGCTCAAACACGTCAAGGAACTCTTCGCGAAGGATATGCAATTTCCCCGTATACCTTTATGAATTCTGTTGCAACACAAGAATATAAAGGTGTTATACGTCTAGGAACACAAGCGGAAATTAATAGTAATTTGGGAGATGTTGCTGTAACAGGTGAAACGCTAAATGGTAGAGGAGCTACAGGTTCTATGCGTGGAGTCGTAAAATTAACGACGCAGGCCGGTGTTGCACCCGAAGGCGATAGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACACGCGGTGGGCAAACTATTAATGGTTCTTTAAATTTAGATCACCTCACAGCAAATGGAATTTGGTCGCGTGGTGGAATGTGGAAAAACGGTGACCAGCCAGTTGCAACAGAGAGATATGCATCTGAACGTGTTCCTGTTGGAACAATTCAAATGTTCGCAGGTGATAGCGCTCCTCCAGGTTGGGTTTTATGTCATGGTGGGACCATTTCTGGAGACCAATTTCCGGACTATCGAAATGTGGTTGGAACAAGATTTGGCGGTGATTGGAATAATCCTGGAATTCCGGATATGCGCGGCCTTTTTGTTAGAGGAGCTGGTACTGGCAGTCATATTTTAAATAATCGTGGCCAAGACGGATATGGAAAGGATAGATTAGGTGTAGGATGTGACGGCATGCATGTTGGTGGTGTCCAAGCACAACAAATGTCATATCATAAACATGCCGGTGGATGGGGCGAATTTCAACGTCATGAGGCACCGTTCGGAGCATCCGTATATCAAGGTTATTTGGGTACTAGAAAATACTCTGATTGGGATAACGCATCATATTTCACAAATGACGGCTTCGAATTAGGTGGTCACCGCGACGCAACAGGCACTCTTAACCGTGAAGGACTTATCGGATATGAGACTCGTCCATGGAATATATCTTTAAATTATATTATTAAAGTCCATTACTAA

Genome Context

Tertiary structure

PDB ID

67163b68df0de9f71cbdc1c0adfe1d0cd1fb89a6523cd55724c4abf13a867633

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6720

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Modular organization of T4 DNA polymerase. Evidence from phylogenetics	Wang,C.C., Yeh,L.S. and Karam,J.D.	1995	7592876	GenBank
Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69	Wang,J., Sattar,A.K., Wang,C.C., Karam,J.D., Konigsberg,W.H. and Steitz,T.A.	1997	9215631	GenBank
Divergence of a DNA replication gene cluster in the T4-related bacteriophage RB69	Yeh,L.S., Hsu,T. and Karam,J.D.	1998	9555879	GenBank
RNA and protein determinants of autogenous translational control by the Ssb proteins of bacteriophages T4 and RB69	Borjac,J., Petrov,V.M. and Karam,J.D.	2004-09-17	—	GenBank
Enterobacteria phage RB69 complete genome	Petrov,V., Nolan,J., Chin,D., Letarov,A., Krisch,H.M. and Karam,J.D.	2002-08-01	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature