Protein

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Genbank accession
YP_012792011.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVNSFERRTQQGDDLGIRSSNFGGLNTTASPLNIPYEDSPNLLNVDVDVSGNVSKRQGTEILLKYANTTPVYTFPVKSVLGYDYVLTKSGGLLEVAGVIGKAVGAYKSFSNVFSAAAANVKPYFTLLSDVEPRVLILTGTNTPVQVKFVEQTFTTTSGSPTTTVVIPNASRFQYDTPILYMNRNFTGGATYSYNSTTKALTISNLPSWSGSMTFDLVLPVWSWWAESLRWFGDRFYDAVSRFNVNKADQSVAIPAALRSDLDTIQGTYGRYPMLLYKTATFNDTYTFSNTGQPANADSYGWGDGSVYNVGASAYLNTSPFFATFGDTRTPTPQPPETVHLLRQRELRFNYGNGATGANLRVTVDGAALSPNYSSTVAGTNRAYALYKADGTLCTSASDQAYYIAFTGATPLGISPTAAVTITNVDRTYIGSAATQTDNAYVQGGYFKVYGLGLWANYGTGQFPRIATVYQSRLVLGGFTNDPTRVVFSATGDTVEGGVKYNFFQVTDDLDGLDSDPFDLVVSSSQADDYVTGLVEWQSSLFVLTRRATFRANGGDATISPARRFVNYISSLGLVNPFSVVRTDTAVFYLSDSGVFNLTPRVEDGEYQAIEKSIKIRKVFGKTTSTAISSAAWMSFDQNRKVLYVALPRGSETTVASALYVYNTFRDSWTQYDTLGGFKTYTGHPYVDTVLGDSFLLMVAYGGTVCMLKLYGSRYVDFFNKCGSFTGTVLTANSGIYTWTAPFWNSPVISNISVTGTTTLAVQRYELPTDLQVVPYDNVEDLSIYINGTRLSFGTDWVKQGKAIYLLSDPGDGKTVSIVPRCPVNVSYEGDVTFDETTVQTVWVNNLLQIQGTDYTLSGTTLTFTDTLTNAVVEVGNAYISYYQSPMFLLGSLSNLKKVKHVYLYFDNEDVLPVYTIGDLASGQDVDDLVGKWKTRANANISVTYDSENTSETSYDIYSFSDLVWDNAFFDVDPTNLQSTRYALFKEALLGVGYNYQIGVWSFDEASWKLCGYQVDARLSGKRYTGGN
Physico‐chemical
properties
protein length:1027 AA
molecular weight: 112607,16480 Da
isoelectric point:4,88755
aromaticity:0,13340
hydropathy:-0,13155

Domains

Domains [InterPro]
DC_1821
STR
1–1027
DC_1821
YP_012792011.1
1 1027
Architecture
STR
STR 1-1027
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012792011.1
1 1027
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,8705
Central domain 146 462 318 0,8741
C-terminal 463 1027 564 0,0566
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-462
C-terminal
463-1027

Taxonomy

  Name Taxonomy ID Lineage
Phage Leptolyngbya phage LPP-2, strain SPI
[NCBI] 		2996053 Uroviricota > Caudoviricetes > Saffermanviridae > Wumptrevirus LPP2 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012792011.1 [NCBI]
Genbank nucleotide accession
NC_111529 [NCBI]
CDS location
range 28990 -> 32073
strand -
CDS
ATGGTTAACTCTTTTGAACGACGAACACAACAAGGTGATGACCTTGGTATCAGGTCAAGTAACTTTGGTGGTCTAAACACTACAGCGTCACCGTTAAACATCCCGTATGAAGACAGCCCAAACCTACTTAACGTAGATGTAGACGTAAGTGGTAACGTCAGTAAACGACAAGGAACCGAGATACTACTGAAGTATGCCAACACAACGCCCGTGTACACGTTCCCAGTTAAGTCTGTGCTTGGGTACGACTATGTACTTACTAAGTCTGGTGGGTTGCTTGAAGTAGCTGGTGTTATCGGCAAAGCAGTAGGGGCGTACAAGAGCTTTAGTAACGTGTTCTCTGCTGCCGCAGCTAACGTTAAACCGTACTTCACTTTGTTGTCGGACGTAGAACCTCGTGTACTTATCCTGACTGGGACAAACACACCTGTACAGGTCAAGTTCGTAGAGCAGACCTTTACGACTACAAGTGGTTCACCGACGACGACTGTAGTGATCCCGAACGCTTCTAGGTTCCAGTACGACACACCTATCCTGTACATGAACCGTAACTTCACTGGTGGTGCTACGTACTCGTATAACTCGACAACCAAAGCACTGACTATCAGTAACTTACCGTCATGGTCTGGAAGTATGACCTTTGACTTGGTGTTACCTGTGTGGTCGTGGTGGGCTGAGTCCTTGCGTTGGTTTGGTGACAGGTTCTATGACGCTGTGTCTAGGTTCAACGTAAACAAAGCTGACCAGTCTGTAGCTATCCCTGCTGCACTACGAAGCGACTTAGACACCATACAAGGTACTTACGGTCGTTACCCTATGTTGTTGTACAAGACTGCTACGTTCAACGACACGTACACGTTCAGTAACACAGGACAACCAGCTAACGCAGACTCGTACGGTTGGGGTGATGGTTCTGTCTACAACGTAGGGGCATCAGCATACCTGAACACATCACCGTTCTTTGCTACGTTTGGTGATACTCGTACACCAACACCACAGCCACCTGAGACGGTACATCTGTTAAGACAGCGAGAGCTACGGTTTAACTACGGTAACGGTGCTACTGGTGCTAACTTACGGGTTACTGTAGATGGTGCTGCGTTGTCTCCAAACTACAGCAGTACTGTAGCAGGGACTAACAGAGCTTACGCACTGTACAAGGCTGACGGTACGTTGTGTACATCAGCTAGTGATCAGGCTTACTACATAGCGTTTACAGGTGCAACACCGCTAGGTATCTCACCAACAGCAGCAGTGACCATCACAAACGTAGACAGAACGTACATCGGCAGTGCAGCGACACAAACAGATAACGCTTATGTGCAGGGTGGATACTTTAAGGTTTACGGTCTAGGGTTGTGGGCTAACTACGGCACTGGTCAGTTTCCTCGTATCGCTACTGTTTACCAGTCACGTCTAGTGCTTGGTGGTTTTACCAACGACCCTACGCGTGTTGTCTTTAGTGCTACAGGTGACACGGTAGAAGGTGGTGTTAAGTACAACTTCTTTCAGGTTACAGATGACCTTGATGGTCTTGACTCTGACCCCTTTGATCTTGTTGTGTCGTCATCTCAAGCAGACGACTACGTAACTGGTCTGGTCGAGTGGCAGTCATCTTTGTTTGTCTTGACTCGTAGAGCCACGTTTAGAGCTAACGGTGGTGATGCAACCATCTCACCAGCTAGACGGTTTGTGAACTACATCTCATCGCTAGGTCTTGTTAACCCCTTCAGTGTTGTACGTACTGATACTGCTGTGTTCTATCTATCTGATAGTGGTGTGTTTAACCTGACACCTCGTGTAGAAGATGGCGAGTACCAAGCTATCGAGAAGTCTATCAAGATCCGTAAGGTGTTTGGTAAGACAACAAGTACGGCTATCTCAAGTGCTGCTTGGATGTCTTTTGATCAAAACCGTAAGGTACTTTATGTCGCCTTACCTCGTGGTTCTGAGACAACAGTAGCTAGTGCGTTGTACGTCTATAACACGTTTCGTGACTCGTGGACACAGTACGACACACTAGGAGGGTTCAAGACATACACAGGACACCCATATGTTGATACTGTCCTTGGTGATAGTTTCTTACTGATGGTTGCCTACGGTGGTACGGTCTGTATGTTGAAGCTATACGGAAGTCGTTACGTAGACTTCTTTAACAAGTGTGGTTCTTTTACGGGTACTGTACTGACAGCTAACAGTGGTATCTACACATGGACAGCACCTTTCTGGAACAGTCCAGTTATCTCTAACATATCTGTCACAGGTACGACAACACTAGCAGTACAGCGGTATGAGCTACCTACAGATCTTCAAGTAGTGCCATACGACAACGTAGAAGACTTGTCTATCTACATCAACGGTACACGTTTATCTTTCGGTACTGACTGGGTTAAACAAGGAAAAGCTATCTACTTGTTGTCTGACCCAGGTGACGGTAAGACGGTAAGTATCGTACCTCGTTGTCCTGTTAACGTTAGTTACGAAGGTGATGTAACGTTTGACGAAACAACAGTACAAACTGTGTGGGTAAACAACTTGCTTCAGATACAAGGTACAGACTACACACTAAGCGGTACTACGCTGACCTTTACGGACACACTGACTAACGCAGTGGTAGAGGTAGGTAACGCGTACATCTCGTACTACCAGTCTCCTATGTTCCTGCTTGGTTCGTTGTCTAACCTGAAAAAGGTGAAGCATGTGTACCTGTACTTCGACAACGAAGACGTACTGCCTGTGTACACTATCGGTGATCTGGCTTCTGGTCAGGATGTAGATGACTTAGTTGGTAAGTGGAAGACACGAGCTAACGCTAACATCTCTGTCACATACGACAGTGAGAACACGTCTGAGACTTCTTACGACATCTATAGCTTTAGTGACCTAGTGTGGGATAACGCTTTCTTTGACGTAGACCCCACAAACTTACAGTCAACACGTTACGCTTTGTTTAAGGAAGCACTGCTAGGTGTCGGGTACAACTATCAGATAGGTGTCTGGTCGTTTGATGAGGCTTCATGGAAACTCTGTGGTTATCAGGTTGATGCAAGACTCAGTGGTAAACGCTACACAGGAGGAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1a26ce0375a8384990e52533c296dca53d571b4281445435fb93645f1441cdb8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2768
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequencing the genomes of LPP-1, the first isolated cyanophage, and its relative LPP-2 reveal different integration mechanisms in closely related phages Shaalan,H., Cattan-Tsaushu,E., Li,K. and Avrani,S. 2023 — GenBank