Protein

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Genbank accession
NP_050997.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,62
Protein sequence
MSKIIPNIVVSMPTQLFTLRRKFQACSNGKIYIGKSNTDPTIPTNQIQVYIENEDGSTVPVAQPIMINHAGFPVYNGQIAKFVTVESHSMAVYDSDGAQQFYFADILKYGPNRFKEQAAQYIAYIEKLKGTTTQTTGDSTTDVMSQKACTDTFAEKNSKEPLKAGRLNLESSNGDTIFNLGGTDGSAGSEFAYVKNSKRTQIYDTATQTTLLFPQKNGTLAVEEDTYTKTEVDAKINSVKWTTNKLENGWMKDPNTGIIIQWGSVYKTDRSRKLFPMAFPNTLAGMGLANFNYDDTLSEMYAPNIMSADKVGFKMRQSLVTDGYKDSPLTDMRWIAIGW
Physico‐chemical
properties
protein length:339 AA
molecular weight: 37708,15410 Da
isoelectric point:6,75585
aromaticity:0,10324
hydropathy:-0,44690

Domains

Domains [InterPro]
IPR009093
ATT
1–113
IPR009093 G3DSA:2.60.40.3940
IPR009093
ATT
1–105
IPR009093 IPR054075
IPR036730
ATT
2–111
IPR036730
IPR036730
ATT
7–109
IPR036730
DC_0777
STR
78–331
DC_0777
NP_050997.1
1 339
Architecture
ATT
STR
ATT 1-113 | STR 114-339
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_050997.1
1 339
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9776
Central domain 154 328 176 0,1164
C-terminal 329 339 10 0,9958
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-328
C-terminal
329-339

Taxonomy

  Name Taxonomy ID Lineage
Phage Acyrthosiphon pisum secondary endosymbiont phage 1
[NCBI] 		2682836 Uroviricota > Caudoviricetes > Sendosyvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_050997.1 [NCBI]
Genbank nucleotide accession
NC_000935.1 [NCBI]
CDS location
range 21590 -> 22609
strand +
CDS
ATGTCAAAAATTATCCCCAATATTGTCGTGAGTATGCCCACTCAGTTATTTACGCTAAGACGAAAATTTCAGGCATGTTCAAACGGCAAAATCTATATCGGTAAAAGCAATACCGATCCAACAATACCAACGAACCAGATTCAAGTGTATATTGAAAACGAAGATGGCTCAACAGTGCCGGTTGCTCAACCCATTATGATTAATCACGCCGGGTTCCCGGTTTATAATGGACAAATCGCTAAATTTGTGACAGTCGAAAGCCACTCGATGGCGGTCTATGATAGTGATGGCGCCCAACAGTTTTATTTCGCTGACATATTGAAATATGGCCCCAATAGATTTAAAGAACAGGCTGCACAGTATATTGCGTATATCGAAAAATTAAAAGGAACGACTACACAAACGACCGGTGACTCAACAACCGATGTGATGAGCCAAAAAGCCTGTACAGATACTTTTGCGGAAAAAAATTCAAAAGAACCCCTCAAAGCTGGAAGACTTAACCTTGAATCCTCAAACGGTGATACGATTTTTAATCTGGGCGGTACAGACGGGTCAGCAGGTTCTGAGTTTGCGTATGTCAAAAATTCAAAAAGAACCCAGATTTACGATACAGCCACACAGACCACTTTATTATTTCCACAAAAAAATGGCACGCTGGCAGTAGAGGAAGATACCTATACAAAAACAGAAGTCGATGCAAAAATAAATTCAGTAAAATGGACAACAAATAAATTGGAAAATGGTTGGATGAAAGATCCGAATACGGGCATAATTATTCAGTGGGGTAGCGTGTATAAAACTGATAGGTCAAGAAAGTTATTTCCTATGGCTTTCCCAAATACCTTAGCCGGAATGGGATTGGCTAATTTCAATTACGATGATACGCTATCTGAAATGTATGCACCTAATATAATGAGTGCGGATAAAGTTGGATTTAAAATGCGTCAGAGTTTGGTCACTGATGGATATAAGGATTCTCCATTAACTGATATGAGATGGATTGCAATAGGATGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
69ac9fd36c0092b6e7cb211285f3d63a122bdd75337a21ae805f52d957e8799d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8014
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of APSE-1, a bacteriophage infecting the secondary endosymbiont of Acyrthosiphon pisum van der Wilk,F., Dullemans,A.M., Verbeek,M. and van den Heuvel,J.F. 1999 10489345 GenBank