Protein

View in Explore
Genbank accession
AVO23975.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MQSINQPQKILVPFAQNDSAKVEIPVTTTSPGRFSQTLGSPPETALPPESGGTPPQLPDFNGAMNQQSRLAWWMMAGGRFAFDSTWANNTYVNGYPRGAVLPAAIGAGLIGMGEWYNNAEANTADPDVNGAGWVPGYHYGVTALTGQTGGTLTLSPAQAAKRTLTIAGTLTSNLVVVLPAWVYTWRIVNNTGGAYTVTVKNAATTGVVIPQNGVSTTVHCDGTQVSFDSPNIPAAVLSTQPMQLGQATGRLLAVRRFAVAGATTYTPTTGTNTVIVEVVGAGASGAGTVAALSGQAAAGGGGGGGAYAKARIVSGFAGVTITVGAPGVSAAPGNAGQAGGASSFGSLVVCPGGAGGPQGQGSSSANYSAPGLGAAAPTFGGSADVIVAASGAAGSPGLLFSSSIVISGNGANTPYGSGGGGAGSSTAGQTGTGLSAGGQGSGGGGGFSTSGGSPGSGGSGGGGLVLVWEYA
Physico‐chemical
properties
protein length:471 AA
molecular weight: 45390,70990 Da
isoelectric point:6,71959
aromaticity:0,06794
hydropathy:0,10764

Domains

Domains [InterPro]
DC_1179
STR
1–435
DC_1179
IPR049304
STR
260–467
IPR049304
AVO23975.1
1 471
Architecture
STR
STR 1-467 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPP6
[NCBI] 		2099857 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO23975.1 [NCBI]
Genbank nucleotide accession
MG944231.1 [NCBI]
CDS location
range 23184 -> 24599
strand +
CDS
ATGCAATCGATCAATCAGCCGCAAAAAATCCTCGTACCCTTCGCCCAAAACGATAGTGCGAAGGTCGAAATTCCGGTGACGACCACGAGCCCGGGGCGTTTCTCTCAGACCTTGGGATCGCCGCCGGAGACTGCGCTGCCGCCCGAGTCCGGCGGTACCCCTCCTCAGCTGCCGGATTTTAACGGCGCGATGAATCAACAGTCGCGCCTTGCGTGGTGGATGATGGCCGGCGGTCGTTTTGCGTTCGACTCGACCTGGGCCAATAACACCTACGTCAACGGCTATCCGCGTGGTGCGGTGCTGCCGGCGGCAATCGGTGCCGGTCTGATCGGCATGGGCGAGTGGTACAACAACGCCGAAGCTAACACCGCCGATCCGGACGTCAACGGCGCAGGTTGGGTGCCGGGCTATCACTACGGCGTGACGGCGTTGACGGGCCAGACCGGCGGCACGCTGACGCTATCTCCGGCGCAGGCGGCTAAGCGCACGCTCACAATCGCCGGCACGCTGACATCGAACCTCGTCGTTGTCCTGCCGGCCTGGGTCTACACCTGGCGCATCGTCAACAACACCGGGGGCGCGTACACCGTCACCGTAAAAAACGCCGCTACGACCGGCGTGGTCATCCCTCAAAACGGGGTTTCGACGACCGTACATTGCGACGGCACGCAGGTCTCGTTCGACTCGCCTAACATCCCGGCTGCGGTGCTGTCCACGCAGCCAATGCAGCTCGGTCAGGCGACAGGTCGTTTACTGGCCGTGCGCCGCTTTGCCGTCGCGGGCGCGACGACCTACACACCGACAACCGGTACTAACACCGTGATCGTCGAGGTCGTGGGCGCAGGCGCGAGCGGGGCCGGTACCGTGGCCGCGTTGAGCGGGCAAGCCGCCGCAGGTGGCGGTGGCGGTGGCGGCGCCTACGCTAAGGCGCGCATCGTGTCGGGCTTTGCGGGCGTGACGATCACCGTCGGCGCGCCGGGCGTGTCGGCTGCACCGGGTAACGCAGGTCAAGCCGGTGGTGCATCGAGCTTTGGTAGTTTGGTCGTGTGTCCGGGCGGAGCGGGCGGCCCGCAAGGTCAGGGCAGTTCGTCGGCGAACTACTCCGCCCCTGGTCTAGGTGCCGCGGCGCCGACCTTTGGCGGTAGCGCCGACGTGATCGTGGCCGCAAGCGGCGCGGCAGGCAGCCCGGGTCTGTTGTTCAGCTCGAGCATCGTCATCAGCGGCAACGGTGCTAACACGCCGTACGGTTCGGGCGGTGGCGGCGCGGGGTCGAGCACGGCCGGTCAGACTGGTACGGGGTTGAGCGCCGGCGGCCAGGGCAGCGGCGGCGGTGGCGGGTTCAGTACGTCGGGCGGTAGCCCTGGTAGCGGCGGATCGGGCGGTGGCGGCCTCGTACTCGTTTGGGAATACGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca6da9f050feab2d619fd3ac1cb10890d5c9290340aebe39bef384e66e83e866
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9015
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank