Protein

View in Explore
Genbank accession
YP_009221565.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MARTIYINTDNGSIESAPVAGLNRPSARVPLREIVAGTTETYNLYLVKSDGTYDSRSGSGAVSVNVAIGQRAQTATSGNFTVTDSSGTSAEISSTASAQAVEDVLNAMNSGTGAEGGLCDVQKLGSGIWLATWRENGARTVLTGASVDLTPESVVVPSISVTGDASSKCQQIIEVNRQPAIFQDTWSTITNGFSGTLDADVGRIVQALSAGQSIDFYFEVRIDDDAICSTPIRVLAPVGGAASVSSAAPYGGTLASDPANYPGFSVSAWESALSIEGFSAIAPDDKAVIRGNGTEWVKASNFRVDAGTAGSGTEMGNGLADGAYSVSEGSDTTASGSESHAEGSRTTASGTASHAEGFLTTASGTRSHAEGSGTTANGTASHAEGFLTTASGTGSHAEGSGTTANGTASHAEGLNTTASGDYSSATGRRGKAIHDGARVEADSQDADVSSTTTDQFTARFQNGYEFKGGLAAFEGGASFGDATTQATTRSNLGVTIYGQLYFSASAATTIAAAGTYVKLAGTTTSDSLNGITMPQNNRLQNNSGTTRVFQAMARTDIVDGSGNKAIAIKLAKNGILINPTESNGETTNNVAAHATINWIVSLADGEYVEIWATNNSDTSSITAQHGHLFLKAID
Physico‐chemical
properties
protein length:634 AA
molecular weight: 64535,21760 Da
isoelectric point:4,68509
aromaticity:0,06151
hydropathy:-0,20473

Domains

Domains [InterPro]
DC_1557
STR
227–631
DC_1557
IPR011049
STR
276–458
IPR011049
IPR011049
STR
317–385
IPR011049
cd12820
STR
320–433
cd12820
IPR011049
STR
362–498
IPR011049
YP_009221565.1
1 634
Architecture
STR
STR 227-631 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009221565.1
1 634
Domain Start End Length (AA) Confidence
N-terminal 1 344 344 0,6920
Central domain 345 543 200 0,4299
C-terminal 544 634 90 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-344
Central
345-543
C-terminal
544-634

Taxonomy

  Name Taxonomy ID Lineage
Phage Verrucomicrobia phage P8625
[NCBI] 		1636271 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009221565.1 [NCBI]
Genbank nucleotide accession
NC_029047.1 [NCBI]
CDS location
range 15594 -> 17498
strand +
CDS
ATGGCACGCACGATCTACATTAACACCGACAACGGCAGCATCGAATCCGCACCTGTCGCGGGGCTTAATCGGCCATCCGCAAGGGTGCCGCTGCGCGAGATCGTGGCCGGCACGACTGAGACCTACAATCTTTACTTGGTCAAGTCTGACGGCACCTACGACAGCCGCAGCGGATCCGGGGCAGTCTCGGTCAATGTAGCAATCGGCCAGCGAGCGCAGACCGCTACAAGCGGTAATTTTACAGTTACAGATTCAAGTGGCACTAGCGCCGAGATTTCATCGACCGCATCGGCGCAAGCTGTCGAGGACGTGCTGAACGCAATGAATAGCGGCACGGGCGCAGAAGGCGGGCTTTGCGACGTGCAAAAGCTCGGATCCGGCATCTGGCTGGCTACATGGCGCGAAAATGGCGCCAGAACCGTCTTGACTGGAGCAAGCGTGGACTTGACTCCGGAAAGCGTGGTGGTGCCGTCAATCTCGGTCACAGGCGACGCGTCGAGCAAATGCCAGCAGATTATCGAAGTGAATCGCCAACCTGCCATTTTTCAGGACACCTGGAGCACGATTACAAATGGATTCAGCGGCACGCTAGACGCAGATGTGGGGCGCATCGTTCAAGCTTTAAGCGCTGGCCAGTCCATCGACTTTTACTTTGAGGTCAGAATCGACGACGACGCCATCTGCTCGACTCCAATCCGAGTGCTGGCACCAGTCGGCGGCGCGGCTAGCGTATCGAGTGCGGCGCCATACGGCGGCACACTGGCGAGCGATCCAGCGAACTATCCGGGCTTTTCTGTCAGCGCATGGGAATCGGCATTGTCAATCGAAGGATTTTCTGCTATCGCGCCAGACGACAAGGCAGTCATCCGCGGCAATGGCACCGAATGGGTCAAAGCGAGCAACTTTCGAGTTGACGCCGGGACTGCTGGCAGTGGCACGGAAATGGGCAACGGGCTAGCTGACGGGGCTTATTCGGTATCCGAGGGATCAGATACAACCGCCAGCGGATCTGAATCTCACGCCGAAGGATCCAGAACAACCGCCAGCGGAACTGCATCACACGCCGAGGGATTCTTAACAACCGCCAGCGGAACTAGGTCTCATGCCGAAGGATCCGGCACAACCGCCAACGGAACTGCATCACACGCCGAGGGATTCTTAACAACCGCCAGCGGAACTGGGTCTCATGCCGAAGGATCCGGCACAACCGCCAACGGAACTGCATCACACGCCGAGGGATTAAATACAACCGCATCTGGCGACTACTCATCAGCAACAGGCCGCCGCGGAAAAGCGATTCACGACGGCGCACGCGTCGAAGCTGACTCACAAGATGCAGACGTATCCAGCACTACTACAGACCAATTTACGGCACGATTCCAAAACGGATACGAATTTAAAGGCGGACTAGCTGCATTTGAAGGCGGCGCATCATTCGGAGACGCCACAACACAAGCGACAACACGCTCAAACCTTGGCGTAACGATCTACGGACAGCTCTATTTCTCTGCTTCAGCGGCGACTACAATTGCAGCGGCAGGCACCTACGTGAAGCTGGCAGGCACGACAACCAGCGACAGTTTGAATGGCATTACAATGCCGCAAAACAACCGCCTGCAAAATAACAGCGGCACGACTCGGGTTTTTCAGGCAATGGCGCGCACTGACATTGTTGACGGATCCGGAAACAAGGCCATTGCAATTAAGCTGGCTAAAAATGGAATTCTTATCAATCCGACAGAATCGAATGGCGAAACGACAAACAATGTCGCCGCGCATGCTACAATCAACTGGATCGTCTCTCTGGCAGATGGTGAATACGTCGAGATTTGGGCAACAAATAACTCAGACACTTCAAGCATCACCGCTCAACACGGGCATTTATTCCTTAAGGCTATCGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0d381bd879df4775652ae9e9cec559d2bdbd35611f131d1369cfcbf913ab9d0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7124
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Verrucomicrobia bacteriophage P8625 Genome sequencing Cho,J.-C. 2015-11-11 — GenBank