Protein

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Genbank accession
YP_009948745.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MALSVQRATSDGTMTNIVLSIEFFDTRDIFVQLDETPAIEGTDYTWQGRTQINFINAPLPDGVEVTLTRRTNRSVLRHVFSEGAEFTRDNLDAAHKQLLYLSQEMTEGSGTSDFYGDLDMHRYRVRNMAQGTENRDAVTFLQLKEVADRVTAIENIKGTNRRGPITISTQSPDTVPVQYEEWVMIGDVDNGAFVNSSNDKDQE
Physico‐chemical
properties
protein length:203 AA
molecular weight: 22890,03630 Da
isoelectric point:4,61416
aromaticity:0,07882
hydropathy:-0,53350

Domains

Domains [InterPro]
DC_1609
STR
1–202
DC_1609
IPR005604
ATT
4–109
IPR005604
YP_009948745.1
1 203
Architecture
ATT
STR
ATT 1-109 | STR 110-202 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_OWB
[NCBI] 		2419783 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009948745.1 [NCBI]
Genbank nucleotide accession
NC_048167.1 [NCBI]
CDS location
range 33894 -> 34505
strand +
CDS
ATGGCATTAAGTGTACAACGTGCTACGAGCGACGGTACTATGACCAACATCGTCCTCAGCATTGAATTTTTCGACACACGCGACATCTTTGTTCAGTTGGACGAGACACCTGCAATCGAGGGTACAGATTACACTTGGCAGGGTCGCACACAGATTAACTTTATTAACGCCCCGCTACCTGATGGGGTGGAAGTCACGCTAACACGCCGTACTAACCGCTCTGTGTTACGCCACGTATTCTCCGAGGGTGCTGAGTTCACCAGAGACAACCTTGACGCTGCACACAAGCAATTGCTGTACCTGAGTCAAGAGATGACAGAGGGTTCTGGTACTAGCGACTTCTATGGTGACTTGGATATGCACCGTTACCGAGTGCGCAACATGGCACAAGGTACGGAAAACCGAGACGCCGTAACGTTCCTCCAATTGAAAGAGGTTGCAGACCGTGTAACCGCAATTGAGAACATCAAGGGTACGAACCGCCGAGGCCCAATCACTATCTCCACACAGTCCCCTGATACCGTTCCGGTTCAGTATGAGGAATGGGTGATGATTGGTGATGTGGATAATGGCGCATTCGTTAACTCATCTAACGATAAAGACCAAGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f2414371a63c3c726d0b02f127e3637fe1916854852b237a4144a7a286bdd49c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8132
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of the first tail tubular proteins receptor that mediate phage adsorption to Vibrio parahaemolyticus Zhang,H. 2020-01 — GenBank