Protein

View in Explore
Genbank accession
AAX44402.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MSRIDFPANPNVGQDYTYNNSVWRWDGYVWRRIPDPGAPGPTGPAGAPGLTGPAGPDGPSGPPGPPGPAGGPPGPTGPAGDDGAPGPQGPPGIGGPTGPQGPAGSPGPTGPVGPSNPGPTGPTGPTGPTGPDGPTGPPGPGNTGTIDSVKQYRTPGVERSCESPIFVVNNNTIGIGSTSNAFGNRFAQNDDPTTANGGSWTVCDGDLWYDMDSGAGGGPGPAGPPGPSGPAGPPGPAGPPGSGGGANVETSDTAPSNPSDGDLWWDSINGRLNVYYQDADSSQWVSSNGVGVGSTGPAGPTGPTGPTGPTGSAGIGSTSIISQGDSFVQVLDGSNASGIGSIAFETQGTRRWHVTNQGHIIPALNCSYDLGNAEQKVRHLFLCDNSLKFVGADDVERAVGITNGNLTFMGSQLLTVSLTTPSEGEVLEYNGTVWANKAKTPVAGLFQTKNWNMPF
Physico‐chemical
properties
protein length:455 AA
molecular weight: 45213,55560 Da
isoelectric point:4,30381
aromaticity:0,06813
hydropathy:-0,53077

Domains

Domains [InterPro]
DC_2298
STR
2–96
DC_2298 G3DSA:1.20.5.320
IPR050149
Unmapped
36–314
IPR050149
DC_1342
ATT
74–455
DC_1342
AAX44402.1
1 455
Architecture
STR
ATT
STR 2-73 | ATT 74-455
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM2
[NCBI] 		268746 Uroviricota > Caudoviricetes > Pantevenvirales > Salacisavirus > Salacisavirus pssm2
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >
Host Prochlorococcus marinus str. NATL1A
[NCBI] 		167555 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAX44402.1 [NCBI]
Genbank nucleotide accession
AY939844.2 [NCBI]
CDS location
range 20775 -> 22142
strand +
CDS
ATGTCAAGAATTGATTTTCCAGCTAATCCTAATGTAGGTCAAGATTATACCTACAATAATTCCGTTTGGAGATGGGATGGATACGTTTGGAGAAGAATTCCCGATCCAGGTGCTCCAGGTCCAACTGGTCCTGCTGGTGCTCCAGGTTTAACTGGACCTGCTGGTCCTGATGGTCCAAGTGGTCCTCCTGGTCCTCCTGGTCCTGCTGGTGGTCCTCCAGGTCCAACTGGTCCTGCTGGTGATGATGGTGCTCCTGGTCCTCAAGGTCCTCCAGGTATCGGTGGTCCAACTGGTCCTCAAGGTCCTGCTGGTTCTCCAGGTCCAACTGGTCCTGTAGGTCCTTCAAATCCAGGTCCAACTGGTCCCACAGGTCCCACAGGTCCAACTGGACCAGATGGTCCTACAGGTCCACCAGGTCCAGGTAATACAGGAACGATTGATAGTGTAAAGCAATATAGAACTCCTGGTGTAGAGAGAAGTTGTGAAAGTCCGATCTTTGTAGTTAATAACAATACAATTGGTATTGGATCGACAAGTAACGCTTTCGGAAATAGATTTGCTCAGAATGATGATCCTACTACTGCTAATGGTGGTAGTTGGACTGTATGTGATGGAGATTTATGGTATGATATGGACTCTGGTGCTGGTGGTGGACCTGGTCCTGCTGGTCCTCCAGGTCCATCTGGTCCAGCAGGTCCTCCAGGTCCAGCAGGTCCTCCTGGATCTGGTGGTGGTGCAAATGTAGAAACATCTGATACTGCACCAAGTAATCCTAGTGATGGTGATCTCTGGTGGGATTCTATTAATGGACGATTAAATGTTTATTACCAAGATGCTGATAGTTCACAGTGGGTTAGTTCTAATGGTGTAGGTGTTGGATCAACAGGTCCAGCAGGTCCTACAGGTCCAACTGGTCCAACTGGTCCGACTGGTTCTGCTGGTATTGGATCTACATCTATAATATCTCAGGGTGATAGTTTCGTTCAAGTACTTGATGGTAGTAATGCCTCTGGTATTGGATCAATTGCATTTGAAACACAAGGAACTAGAAGATGGCACGTTACTAATCAAGGACATATAATTCCTGCATTAAATTGTAGTTATGATCTTGGTAATGCAGAACAAAAAGTAAGACATCTATTCTTATGTGACAATAGTTTAAAGTTTGTAGGTGCGGATGATGTTGAACGGGCAGTTGGTATTACTAATGGTAATTTAACCTTTATGGGTTCTCAATTACTAACAGTTAGTCTTACAACTCCTTCCGAAGGTGAAGTTTTAGAGTATAATGGAACAGTATGGGCAAACAAGGCTAAAACTCCAGTTGCTGGATTATTCCAAACAAAAAATTGGAATATGCCTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
57d7b83017022a1c2f9ee2d4ef7d3cca73421fcddb2b543fec2c38615d18ef66
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6425
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments Sullivan,M.B., Huang,K.H., Ignacio-Espinoza,J.C., Berlin,A.M., Kelly,L., Weigele,P.R., Defrancesco,A.S., Kern,S.E., Thompson,L.R., Young,S., Yandava,C., Fu,R., Krastins,B., Chase,M., Sarracino,D., Osburne,M.S., Henn,M.R. and Chisholm,S.W. 2010 20662890 GenBank