Protein

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Genbank accession
YP_011630800.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MISNNAPAKMVLNSIMTGYTMAYIQHSIYTDYDVIGRSFWLKLGEEVDRRDFTGIDTFFVMINNLTPSTTYQVQGAFYDSIIDSELLNAKIGINLSNETNFKTKEKPIIVAARSESEPVDVGVGAPIVVVETTGEASYCTIELKSTATEDSPWTKYYIGALGSTIKFGGVPIGDYKIRISGQVTMPDGVTVDSSGYYEFPNILTVAYNFVPPTAPIDIVFKAARIADGKERYDVRIEWDWERGAGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDREGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGTTLRISSGVVIGTPNGDVDIGTGLQGKQTVFVYKLATSLPTKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLEGTSWSDVVQWSGTEGTIGHDGQRGPGMYSMGIPGLGGWDDGQANAFFQNNFGKPPVKYDVLTQYNSNAPQTAFTRQWNGSGWINPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR
Physico‐chemical
properties
protein length:685 AA
molecular weight: 74986,52550 Da
isoelectric point:5,05579
aromaticity:0,10365
hydropathy:-0,24204

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
103–197
IPR057551
YP_011630800.1
1 685
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-664 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011630800.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 408 408 0,8938
Central domain 409 617 210 0,1593
C-terminal 618 685 67 0,4931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-408
Central
409-617
C-terminal
618-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE3
[NCBI] 		2575327 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus SE3
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011630800.1 [NCBI]
Genbank nucleotide accession
NC_100739.1 [NCBI]
CDS location
range 23461 -> 25518
strand +
CDS
ATGATTTCGAATAATGCACCAGCCAAGATGGTCTTAAATAGTATTATGACTGGATATACTATGGCGTATATCCAGCATTCTATCTATACCGACTACGATGTTATCGGTAGATCATTCTGGCTTAAACTTGGCGAAGAAGTGGATAGAAGAGATTTCACTGGAATCGACACTTTCTTTGTTATGATCAATAACTTAACTCCCTCAACTACCTATCAGGTTCAGGGAGCTTTTTATGACTCAATTATTGACTCAGAACTTTTAAATGCAAAAATTGGTATTAACCTCTCTAATGAAACTAACTTTAAAACAAAAGAGAAGCCAATAATTGTTGCAGCAAGATCTGAGTCAGAACCTGTGGATGTTGGGGTGGGCGCACCGATAGTTGTTGTGGAAACAACTGGTGAAGCAAGCTACTGTACTATTGAGTTAAAAAGTACAGCCACTGAAGACAGTCCATGGACTAAATATTACATTGGGGCTTTAGGTTCTACTATTAAATTTGGTGGAGTTCCTATAGGAGATTATAAGATCAGAATATCTGGTCAAGTAACTATGCCTGATGGTGTTACAGTTGATTCTTCTGGATACTATGAGTTTCCTAATATTCTAACTGTAGCCTATAACTTTGTTCCTCCTACTGCACCTATCGATATTGTTTTTAAAGCTGCACGAATTGCTGATGGTAAAGAACGATACGATGTTAGAATTGAGTGGGACTGGGAACGTGGTGCTGGTGCTAACGTTCGTGAATTCTTGGTTACTTACATAAACTCCGAGGAATACGCTAAAACCGGATGGGCTAAAGCTCAAAAGATAAACGTGGGTGCTGCCAGAGCTGCAACAATTATATCATTCCCATGGAAAGTTGAACATACCTTTAAGGTTTCATCAATTGCCTGGGGACCAAACAAACAAGATATAACAGAATCAGCTCCTGTAACATTTATTCTGAATGAAGATACTCCTCTAGATAATAGTTTTGTCAATGAGACGGGTATTGATGTTAACTATGCCTTTATTAAGGGTAGTATGAAAGATGGGGAAATATGGAGACAAACATTCCTAATTGATGCAGCTACTGGTGCTATTAACATTGGTCTGCTAGATAGAGAAGGTAAAGCACCTATTTCTTTCGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATCACTAGAGATATTAATGCTGCAAACTTTATTATGACTAACTTGTCTGGTAAAGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGAGATAATAACTCTGGTATTTGGATGGGCATGGATAATACCTCTGCCAAAGCTAAATTAGATATTGGTAATGCTACACAATGGATACGTTATGATGGTACTACCCTACGTATTTCTAGTGGTGTAGTAATTGGAACACCAAATGGTGACGTAGATATTGGTACTGGATTACAGGGTAAACAAACAGTATTTGTTTATAAGTTAGCAACATCTCTACCCACCAAACCGCTAGAACAAGATTATCCACCTCCTGGTTGGTCAAAAACTCCACCTAACCGTACAGATATGACACAAAATATCTATGCGACCACAGGTACACTTGATCCAGTTACTAACAAACTTCTTGAAGGCACTAGCTGGTCTGATGTGGTTCAGTGGAGCGGTACTGAAGGTACTATAGGACATGATGGACAGCGTGGTCCTGGGATGTACTCCATGGGTATTCCTGGATTAGGTGGTTGGGATGATGGACAGGCTAATGCATTCTTCCAAAATAACTTTGGAAAACCTCCAGTTAAATACGATGTCTTAACACAATATAACAGTAATGCTCCACAAACAGCATTTACCCGCCAATGGAACGGGTCTGGATGGATTAACCCTGCAATGGTTCTTCATGGAAACATGATTGTTAATGGAACTGTAACTGCGGATAAGATTGTGGCAGGAAATGCCTTCTTATCACAAATAGGTGTTAATATAATCTACGATAGAAATGCTGCGTTATCAGGGAACCCTGAAGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1ca219ede1df7086ee4d4250b9ce2ca9833ddbc5bc5fdd970598c267e2960baf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Wang,S., Delaquis,P., Tremblay,D., Moineau,S., Levesque,R. and Goodridge,L. 2019-09-14 — GenBank