Protein

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Genbank accession
AGN30036.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MASINIPGFGYSAVPESPNDGQLYGRRDATWELIALSDGVLEAPADGTEYVRKDLQWVHPTFPTYAATDVTFTATNSQLLSDNVHDALEELYEKYPRKMIFVRSSADFPTPQLLNGVMTHKLEEYEYVIDGDVEISASIGFPGPGLAASLRAVNRSLLMYTGTDAMFHDLGAQGTIEVVGQTEFQAPNGDMFNLISGAGGFSFQTQWADRFTNCNRLGEVYCGGLSTLVFNGGTFRNFNQGLIVHDPGFFEVNTFFMFGNNQAGCKYFTIQGESSTGSVNIDTVTFSLGTNETIFDFNQNIQDTIDTINVRSCTLRGPLNGTLFAPGSLTPRDRKFESVGNTIIGNTVHGGLIYLSGNVTQTVVTTINTPTKAAGTWITEDVSHFNHNVNGALQSEVIRDISSSVDLSVSVQPASGNGVVIRCYLAKNGVVIPESAKTTTADNGKAGNLSISWHTDISQNDYFELYVENRTGTTPIIVTDATLRIP
Physico‐chemical
properties
protein length:486 AA
molecular weight: 52720,05360 Da
isoelectric point:4,65775
aromaticity:0,09877
hydropathy:-0,14012

Domains

Domains [InterPro]
G3DSA:6.20.230.10
ATT
13–35
G3DSA:6.20.230.10 G3DSA:6.20.230.10
G3DSA:6.20.230.10
ATT
39–60
G3DSA:6.20.230.10 DC_0529
AGN30036.1
1 486
Architecture
ATT
ATT
STR
ATT 13-35 | ATT 39-62 | STR 63-486
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN30036.1
1 486
Domain Start End Length (AA) Confidence
N-terminal 1 118 118 0,8896
Central domain 119 348 231 0,9693
C-terminal 349 486 137 0,9864
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-118
Central
119-348
C-terminal
349-486

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage nt-1
[NCBI] 		115992 Uroviricota > Caudoviricetes > Pantevenvirales > Mylasvirus > Mylasvirus persius
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN30036.1 [NCBI]
Genbank nucleotide accession
HQ317393.2 [NCBI]
CDS location
range 147980 -> 149440
strand +
CDS
ATGGCAAGTATTAATATACCTGGCTTCGGCTATTCTGCTGTTCCTGAATCACCAAATGACGGTCAGCTATACGGTAGACGAGACGCTACGTGGGAGCTAATCGCTTTATCAGATGGTGTTCTAGAAGCACCAGCAGATGGTACAGAATACGTACGAAAGGATTTGCAATGGGTTCACCCAACATTTCCAACATACGCAGCAACAGATGTTACGTTCACTGCAACAAATTCACAGCTTCTTTCAGATAACGTGCATGATGCTCTTGAAGAGCTTTACGAAAAATACCCACGAAAAATGATTTTCGTTCGTTCATCTGCTGATTTTCCAACACCGCAGTTGTTAAATGGCGTGATGACACACAAACTTGAAGAGTACGAATATGTAATCGATGGTGATGTTGAAATTAGCGCATCTATCGGATTCCCAGGACCTGGTCTAGCTGCGTCACTGCGTGCAGTCAATCGTTCATTGTTGATGTATACAGGTACTGATGCGATGTTTCATGATCTGGGCGCTCAAGGAACAATCGAAGTTGTAGGTCAAACTGAGTTTCAAGCACCGAATGGTGATATGTTCAATTTGATTTCTGGGGCGGGTGGGTTCTCGTTTCAGACACAATGGGCAGATAGATTTACAAACTGTAATCGTCTAGGTGAAGTTTACTGTGGTGGTCTATCAACGCTTGTATTCAATGGCGGTACATTTAGAAACTTCAATCAAGGATTGATTGTTCATGACCCCGGCTTCTTTGAAGTAAATACGTTCTTTATGTTTGGTAACAACCAAGCAGGATGTAAATATTTCACAATACAAGGTGAATCTTCTACTGGTTCAGTGAACATCGATACAGTAACATTCTCATTGGGTACGAATGAAACGATTTTCGACTTTAATCAGAATATTCAAGACACAATCGACACGATTAACGTTCGAAGCTGTACTCTTCGTGGTCCTCTAAACGGTACATTGTTTGCACCGGGAAGCCTAACACCTAGAGATAGAAAATTTGAGTCTGTTGGTAACACAATTATCGGCAACACTGTACACGGTGGGTTGATTTACCTGAGCGGAAATGTCACTCAGACAGTCGTAACCACAATCAACACACCTACTAAAGCAGCAGGTACATGGATTACTGAAGACGTTTCTCACTTCAATCATAATGTAAACGGCGCGTTGCAATCTGAAGTGATTCGTGACATATCGAGCAGCGTTGATTTGTCAGTGAGTGTTCAACCTGCATCAGGTAACGGGGTTGTTATTCGTTGTTACCTAGCGAAAAACGGTGTTGTTATTCCAGAGAGTGCTAAGACAACAACTGCTGATAACGGCAAAGCTGGTAACTTGTCAATATCATGGCATACTGACATTTCTCAGAATGATTACTTTGAATTGTATGTTGAAAACCGCACTGGTACAACGCCAATCATCGTAACTGACGCAACATTGCGCATACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8961c3fbe6a695c33d1111d197a988c010a6575af0ec3245279a2ad7b933ec7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage nt-1 Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank