Protein

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Genbank accession
CCI88744.1 [GenBank]
Protein name
phage tail fibers
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MELTDITRAFESGDFARPNLFEVEIPYLGQNFKFKCKAATLPSGTVDKIPVGYMNRKLNIAGDRTFDDWTVTIYNDDAHSTRDAIVAWQDLCHGQGNEISGANPADYKKTALVRQFHRNGQEITKEYTLTGIWPTIVAEVQMDWDSNNEVQIFETTFSLDWWQ
Physico‐chemical
properties
protein length:163 AA
molecular weight: 18674,59040 Da
isoelectric point:4,70680
aromaticity:0,12270
hydropathy:-0,49755

Domains

Domains [InterPro]
IPR010667
TAS
20–162
IPR010667
IPR057120
TAS
20–161
IPR057120
CCI88744.1
1 163
Architecture
TAS
TAS 20-162 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiR1-RT
[NCBI] 		1206558 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tegunavirus
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI88744.1 [NCBI]
Genbank nucleotide accession
HE956709.1 [NCBI]
CDS location
range 104334 -> 104825
strand +
CDS
ATGGAGCTTACAGATATCACAAGAGCATTTGAATCAGGTGACTTCGCACGTCCTAACCTATTTGAGGTAGAAATTCCTTATTTAGGCCAAAACTTCAAATTCAAGTGCAAAGCAGCTACATTGCCGTCAGGCACAGTAGATAAAATTCCAGTTGGGTACATGAACCGTAAATTAAATATTGCCGGTGACCGTACTTTTGATGATTGGACAGTAACAATTTACAACGACGACGCTCACTCAACTCGTGATGCTATCGTTGCTTGGCAAGATTTGTGCCATGGTCAAGGTAATGAAATTTCTGGCGCTAATCCAGCTGATTATAAAAAAACAGCTTTAGTACGTCAGTTCCATCGTAATGGACAAGAAATTACTAAAGAATATACACTAACAGGTATTTGGCCTACAATTGTAGCTGAAGTACAAATGGATTGGGATTCTAACAACGAAGTTCAAATCTTTGAGACTACCTTCTCCCTGGACTGGTGGCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c8fd098d7104d8323747e8f0525644ef2147fd5c4df60510d9a2a5cf0f4b7e16
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7893
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank