Protein

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Genbank accession
QCG76048.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPYTIKRYSSVNGGSSKPNKTVNDIQIDNTYSSIGLIGSYNEFYKSQFFQNMLWKMENFSHTIAPLNPIEGQLWFNPDEKSVKVYISNDKPTSVSSDWKNLGSTILNGLTDHESRTGINDPHETTKEQVGLGNVPNVYTFNKTLNLADVLDASICRSNLEVYGTSETYNKTTVNNLFMTKGGTVNNTDRLDGLTSADFVLVDNPVVYRTFDTTGIITNTALTYNNSKGSIVVNTGAGNIELLSGIRSDGRIAAANDTGAMLSFINDNSDPMVTMVVFNRATANNQTAQPVRSYRFTKTNLIIDYDTNPSEMYHTGRIPSNAAVGSLPLNGKAVNTLLLNGMYQSSSPNDNAVVLRDGAGDVHVRHIQVSNPDENIETGNLILFRNSNTSDNYVRRANVSSFQSWFRANEPKGVVKAWIQFNGITGSTYKSHNCTLTKLGTGKYRIYYNSFSTPAAGSVVPFVGVTSDGQISTGMAAGTGRLSYNSSLVYLRSTTYTDLEFFRTYNINFNNYSLDSFTNVYADANNITFTWFF
Physico‐chemical
properties
protein length:532 AA
molecular weight: 58704,45160 Da
isoelectric point:6,40174
aromaticity:0,10714
hydropathy:-0,37256

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCG76048.1
1 532
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,8556
Central domain 231 429 200 0,2440
C-terminal 430 532 102 0,9886
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-532

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM_PA5oct
[NCBI] 		2163605 Uroviricota > Caudoviricetes > Arenbergviridae > Wroclawvirus PA5oct >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCG76048.1 [NCBI]
Genbank nucleotide accession
MK797984.1 [NCBI]
CDS location
range 98961 -> 100559
strand -
CDS
ATGCCTTACACTATTAAACGTTATTCATCTGTCAACGGCGGCTCTTCTAAACCAAATAAAACCGTTAACGATATACAAATAGACAATACGTACTCTTCTATTGGACTAATAGGATCGTATAATGAATTTTACAAAAGTCAGTTCTTCCAGAATATGCTATGGAAGATGGAAAATTTTAGTCACACTATTGCTCCGTTAAATCCGATAGAAGGTCAATTATGGTTTAATCCAGATGAAAAAAGTGTTAAAGTTTACATAAGTAATGATAAGCCTACGTCTGTTTCTTCCGATTGGAAAAATCTAGGATCTACTATTTTAAATGGGCTAACAGATCACGAATCAAGGACAGGTATTAACGATCCCCACGAGACAACAAAAGAACAAGTGGGATTGGGAAATGTTCCTAATGTTTACACATTCAATAAAACATTAAATCTTGCAGATGTATTAGATGCATCTATATGCAGATCTAATTTAGAAGTATACGGGACTTCAGAAACTTACAATAAAACTACTGTAAACAATCTTTTTATGACAAAAGGTGGTACAGTAAATAATACTGACAGATTAGATGGCTTAACTAGTGCTGATTTTGTCCTTGTAGACAACCCTGTTGTTTATAGAACATTTGATACAACCGGTATAATCACTAATACTGCGTTAACGTATAATAACTCTAAAGGTTCTATAGTAGTTAACACAGGTGCAGGAAATATAGAGTTGTTGTCCGGAATAAGATCAGACGGAAGAATTGCAGCTGCAAACGATACTGGTGCTATGTTATCGTTTATTAACGATAATAGTGATCCTATGGTTACCATGGTTGTATTCAATCGTGCTACTGCAAACAATCAAACAGCACAACCAGTAAGATCATATAGATTTACAAAAACTAATTTAATAATAGACTACGATACTAATCCTAGTGAAATGTATCATACAGGAAGAATACCGTCTAACGCTGCTGTCGGTTCACTTCCACTAAACGGAAAGGCTGTCAATACATTATTATTAAATGGCATGTATCAATCTAGCAGTCCAAATGACAATGCAGTTGTATTAAGAGATGGTGCAGGAGATGTACATGTTAGACACATTCAAGTTTCTAATCCAGACGAAAATATAGAAACAGGAAATTTAATTCTATTTAGAAATTCAAATACAAGCGATAACTATGTTAGACGAGCAAATGTCTCTTCATTCCAGTCATGGTTTAGGGCTAACGAACCGAAAGGTGTAGTTAAAGCTTGGATACAATTTAACGGAATAACAGGTTCTACTTATAAGTCACACAACTGTACACTAACTAAACTAGGTACAGGGAAATATAGAATATATTACAATTCATTTTCTACGCCTGCTGCGGGTTCTGTTGTTCCGTTTGTAGGAGTTACTAGTGACGGTCAAATATCTACCGGTATGGCTGCTGGCACTGGGAGACTTAGCTACAATTCATCATTGGTATATTTAAGAAGCACTACTTATACAGATTTAGAATTCTTCAGAACATACAATATTAATTTTAATAACTATTCTTTAGATTCGTTTACTAATGTATACGCAGATGCTAACAACATAACATTTACATGGTTCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4abb1f6e8a2f8744e4d90bffd9b0ebd4f74601271167fed08162f661fba6ecc0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B.G., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., van Noort,V., Drulis-Kawa,Z. and Lavigne,R. 2019 — GenBank
Genomics, Transcriptomics, and structural analysis of Pseudomonas virus PA5oct highlights the molecular complexity among Jumbo phages Lood,C., Danis-Wlodarczyk,K., Blasdel,B., Jang,H.B., Vandenheuvel,D., Briers,Y., Noben,J.-P., Kawa,Z. and Lavigne,R. 2019-06-22 — GenBank