Protein

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Genbank accession
AUR84693.1 [GenBank]
Protein name
cadherin-like protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIKVYADSNANIIVIEDGLIGHRAINTLQAVVVEDNTQVIDIINKTLEDGSGGRVKELHQILLTDFVDKDENPYGTTQQEVVDTLNSLFSMSGSSGGSGGTVNADFKPSIQNQTVETIEDANISYQMVLQGNNKATIYGSSDLPSWLVLDQKSGMLMGSSPPYAGVMGSGIYDVYPFTVTCASPFGSSSGLVEIHVAESTNDMFLSHAFDMQYVDYLYSTDNLSTNYPFNKNTTLEGWSVEVIVKLDSSTTGLYTLGASSGTSSWGACGLHAVNNSLKLMLDYEIIDAGITLNTSDWWSIIVTCDATTNDTIDFEDHIRLHVRNLTQGVTTHKNISTNESGKAYSANRRASFGLSNYWGDYKLGRASLWRGVLNDSDCDAIFNHNTNSPNIYTPSSATFWGGWSASNGTVFPKVEEYNNILDGGNPSPTNRLTMKNMTSLNIYTVTIPSN
Physico‐chemical
properties
protein length:450 AA
molecular weight: 48965,67470 Da
isoelectric point:4,53896
aromaticity:0,09111
hydropathy:-0,23667

Domains

Domains [InterPro]
IPR013783
STR
101–197
IPR013783
PF05345
RBD
117–196
PF05345
IPR015919
STR
133–198
IPR015919
AUR84693.1
1 450
Architecture
STR
STR 101-198 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR84693.1
1 450
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,8876
Central domain 193 391 200 0,2065
C-terminal 392 450 58 0,9066
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-391
C-terminal
392-450

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.063.O._10N.261.45.C7
[NCBI] 		1881308 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio lentus
[NCBI] 		136468 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR84693.1 [NCBI]
Genbank nucleotide accession
MG592441 [NCBI]
CDS location
range 16068 -> 17420
strand +
CDS
ATGATAAAAGTTTATGCAGACAGTAATGCCAATATTATTGTAATAGAGGATGGACTTATTGGTCACAGAGCTATCAACACTCTTCAGGCAGTGGTGGTAGAAGATAATACCCAAGTTATTGACATCATCAATAAGACTCTAGAAGATGGTTCTGGAGGTAGGGTAAAAGAACTTCATCAAATACTATTGACAGATTTCGTAGATAAGGATGAAAATCCTTACGGTACAACACAACAAGAAGTGGTAGACACACTTAACAGTCTCTTCTCTATGTCAGGCAGTAGTGGCGGCTCTGGCGGTACAGTAAATGCCGATTTTAAACCTTCTATCCAAAACCAAACAGTGGAAACTATAGAGGATGCTAACATATCTTATCAAATGGTTTTACAAGGGAATAACAAGGCCACTATTTATGGAAGTAGTGACCTCCCATCTTGGCTAGTGTTAGATCAAAAGTCTGGAATGTTGATGGGAAGCTCTCCCCCTTACGCTGGAGTGATGGGAAGTGGAATTTACGATGTATATCCTTTCACTGTGACTTGTGCCTCACCTTTTGGTAGTAGTTCAGGGCTTGTGGAAATCCATGTCGCTGAATCTACAAATGATATGTTCCTCTCTCACGCATTTGACATGCAATACGTGGACTACCTCTACAGTACAGATAACCTAAGTACCAATTACCCTTTCAATAAAAACACCACACTTGAGGGTTGGAGTGTAGAAGTTATAGTGAAATTGGACTCCTCCACTACAGGTCTTTACACATTAGGAGCCAGTAGTGGTACCTCTTCTTGGGGTGCTTGTGGACTACATGCAGTAAATAATTCTCTTAAGTTGATGTTGGATTATGAAATTATCGATGCAGGTATTACTCTAAACACTTCCGATTGGTGGAGTATTATTGTAACCTGCGATGCAACCACTAACGACACTATCGATTTTGAGGATCACATAAGACTTCATGTGCGAAACCTCACGCAAGGTGTCACCACCCATAAAAATATCTCAACAAACGAGAGTGGTAAAGCTTACTCTGCCAACAGAAGGGCATCTTTCGGTCTTAGTAATTACTGGGGCGATTATAAGTTAGGAAGGGCGAGTTTGTGGAGAGGAGTTTTAAATGATTCTGACTGTGATGCCATCTTCAATCACAACACAAACTCACCTAACATATACACACCTTCGTCAGCAACCTTCTGGGGTGGGTGGAGTGCAAGTAATGGTACAGTGTTTCCTAAGGTAGAAGAGTATAATAATATTCTTGACGGAGGTAACCCTTCCCCTACTAATAGGTTAACTATGAAAAACATGACGTCATTGAACATCTATACGGTAACCATACCTAGCAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
79f958b712951b3421a18cd4ca5fcdbe57c43e347b5e1e54416d0aa0db41dfb2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6052
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank