Protein

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Genbank accession
WGM49816.1 [GenBank]
Protein name
regulator of chromosome condensation
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRMFDYGNEAPALPKIKKLSTGYQHAMLLTQNGDLYAKGSNAAGQLGTGNTTAARAWILVNSSVADVYCSANGTLIKKNDESWWSSGSGAAAGVNSVVNTWTNVSAQINSMLTSLPGSFIKQFVSSFYSSMAIRSDDTVWVIGQNNNGEITGTTAKYNTCVNITSSFPSTPVKIYGSENCMAYTDSTGAFYYSGQMVGGNAGGSANATTFTRYNVGLSTNKIIDFNTTGYGSFFIIETTAGVKQVYAGGYQRYGQLGDGGTTTTILAPAPITTPNSNLIKLFKGTSMYNQHLITKSGIYATGQNSQSQYNGTLGIGSNIDATTYTLAQISLSSYDDIEIHTTLDRTFLWAGDYVYSTGLNSTYSSITSNSYVLDMPSI
Physico‐chemical
properties
protein length:382 AA
molecular weight: 40751,82560 Da
isoelectric point:6,28249
aromaticity:0,11257
hydropathy:-0,14267

Domains

Domains [InterPro]
DC_0433
ATT
1–120
DC_0433 IPR009091
IPR009091
STR
10–214
IPR009091 DC_1778
IPR009091
STR
15–332
IPR009091
IPR051553
Unmapped
19–197
IPR051553
PF13540
STR
20–49
PF13540 DC_0433
IPR000408
STR
23–33
IPR000408
WGM49816.1
1 382
Architecture
ATT
STR
ATT 1-232 | STR 233-381 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WGM49816.1
1 382
Domain Start End Length (AA) Confidence
N-terminal 1 68 68 0,2277
Central domain 69 287 220 0,3992
C-terminal 288 382 94 0,4283
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-68
Central
69-287
C-terminal
288-382

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_Ec-M-J
[NCBI] 		3038267 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WGM49816.1 [NCBI]
Genbank nucleotide accession
OQ718158 [NCBI]
CDS location
range 337470 -> 338618
strand -
CDS
ATGTTACCTTTTGTTAGAATGTTTGATTATGGAAATGAAGCACCAGCATTACCAAAAATAAAGAAATTGTCAACTGGATACCAACATGCTATGCTTTTAACGCAGAATGGAGATTTATATGCTAAGGGTAGTAATGCAGCAGGACAGCTAGGTACTGGTAATACAACAGCAGCGAGGGCATGGATATTAGTTAATAGTTCAGTTGCTGATGTTTATTGCTCTGCTAATGGTACATTGATTAAAAAGAATGATGAATCATGGTGGAGTTCTGGTTCAGGTGCAGCCGCAGGTGTCAATTCAGTTGTGAATACATGGACCAATGTGAGTGCACAAATCAATAGTATGCTTACTTCTCTCCCTGGTTCCTTTATTAAACAATTTGTATCCTCGTTTTATAGCTCAATGGCTATACGTTCGGATGACACAGTTTGGGTAATTGGGCAAAACAACAATGGTGAAATTACTGGAACTACTGCAAAATATAATACATGTGTGAATATAACCTCTAGTTTCCCCAGTACACCAGTAAAAATCTATGGTAGTGAGAACTGTATGGCTTATACTGACAGTACTGGAGCATTTTATTATAGTGGGCAAATGGTAGGTGGGAATGCTGGTGGTTCAGCAAATGCAACAACATTTACTAGATATAATGTTGGTTTGAGTACAAATAAAATTATAGACTTTAATACTACTGGCTATGGTTCATTCTTTATTATTGAAACTACGGCTGGAGTTAAACAGGTATACGCTGGTGGTTACCAACGATATGGACAATTAGGTGATGGTGGCACTACAACAACAATACTTGCTCCTGCACCAATAACTACACCTAACTCTAATTTAATTAAATTGTTTAAAGGTACGTCAATGTACAATCAGCATTTAATAACCAAATCTGGTATATATGCAACTGGTCAAAACTCCCAATCACAATACAATGGTACTTTGGGTATTGGTTCAAACATTGATGCTACTACATATACACTAGCACAAATATCATTATCATCATATGATGATATTGAAATACATACAACATTGGATAGAACATTCTTATGGGCAGGTGATTATGTTTATAGTACAGGTTTAAATTCTACATATTCATCAATTACTAGCAACTCATATGTGTTGGATATGCCATCAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
576666bcdcb8f1a50ccec03fff0ea3d78cf79b87d56a1261ef73190adc6c7898
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8503
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel E. coli Jumbo phage vB_Ec-M-J Kusradze,I., Rigvava,S., Karumidze,N., Goderdzishvili,M., Lossouarn,J. and Petit,M.A. 2016-10-04 — GenBank