Protein

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Genbank accession
XLQ29672.1 [GenBank]
Protein name
long-tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,63
Protein sequence
MADLKVGSTVGGSVIWHQGNFPLNSAGDDVLYKSFKIYSEYNKPQAVDNDFVSKANGGTYLNKVIFNKGMTVPGAGSAVNNTNQCGIYPGNGDAATFATANIDIVSWYGIGFKSSQGSAGRTVVINTRNGDISSKGVIEASQIRATSLSPVNNYDLTRKDYVDGAINIVTANANSRVLRKGDTMTGNLTAPNFFSQNPASQPSHVPRFDQIVIKDSVQDFGYY
Physico‐chemical
properties
protein length:223 AA
molecular weight: 23839,18270 Da
isoelectric point:8,55684
aromaticity:0,09865
hydropathy:-0,30135

Domains

Domains [InterPro]
DC_0466
STR
1–221
DC_0466
IPR005601
STR
56–197
IPR005601
XLQ29672.1
1 223
Architecture
STR
STR 1-221 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLQ29672.1
1 223
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,4316
Central domain 126 212 88 0,1414
C-terminal 213 223 10 0,8988
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-212
C-terminal
213-223

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Ec_YwIITB1
[NCBI] 		3366621 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLQ29672.1 [NCBI]
Genbank nucleotide accession
PQ356294.1 [NCBI]
CDS location
range 157242 -> 157913
strand +
CDS
ATGGCTGATTTAAAAGTAGGTTCAACTGTGGGTGGATCTGTCATTTGGCATCAAGGAAATTTTCCATTGAATTCAGCCGGTGACGATGTACTCTACAAATCATTTAAAATATATTCAGAATATAATAAACCGCAGGCAGTTGATAACGATTTCGTTTCTAAAGCTAATGGCGGTACGTATTTAAATAAAGTAATTTTTAATAAAGGAATGACTGTTCCCGGTGCAGGGTCAGCTGTAAACAATACAAACCAGTGCGGTATTTATCCAGGTAATGGCGATGCAGCTACTTTTGCTACAGCAAATATTGATATTGTTTCATGGTATGGTATTGGTTTTAAATCATCACAGGGTTCAGCAGGTAGAACTGTAGTAATTAACACGCGAAATGGAGATATTAGCTCAAAGGGTGTAATTGAAGCATCACAAATACGCGCAACTTCATTATCTCCAGTAAATAATTATGACCTTACACGGAAAGATTATGTCGATGGAGCAATAAATATTGTTACAGCAAACGCAAACTCTAGAGTTTTGCGTAAAGGTGACACCATGACAGGTAACTTAACAGCACCAAACTTTTTCTCGCAGAATCCTGCGTCTCAACCCTCACACGTTCCGCGATTTGACCAAATCGTGATTAAGGATTCTGTTCAAGATTTCGGCTATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7dc70966f2d1426678d68701061a053bfb681d475d786d29a6f30c4b26035b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7201
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Escherichia coli genome Wangchuk,J., Chatterjee,A., Khan,R. and Kondabagil,K. 2021-07-12 — GenBank