Protein

View in Explore
Genbank accession
QIG60718.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,66
Protein sequence
MADNIKIEERVLDGDLVGPVNAEIDTKEFTGTVSLENSLLDGSGSEINVELSESMEVVGIDDLVEVKSEIDKSVSKAESSVAESQRQIDKANETIRNLDAISGQITNLVDTAKQAAATADNRAHDAQTSETNAAGSASSAKSSQAAAKRSQDAAKASQTAAKASETEAKAQAVEAAKQATAATAQATIATDQAKSATASAAKADAEQKAALAAQKAAEKARDQAGSSAGDASQSAGNAYRSQQLAKASEDKANQYQADAAKSSAEAAASASSMTQSVTDANAAKIAAEAAQLASENARDVSTAKSVVASQKAAAASTSADAAKASQDAAKASQDAAKISETNAKNSEAKAKTSETNAKTSETNAKSSQTAAANSAKASDTSAKASQASQVAASKSASQAAASKQAAAASASASEQSAQESENSNQASQTAQTNAEVAQAAAEAARDAAKVSETNAKSSETKASTAATTATSRAAASSNSAKAAATSANQAAQSKNAAKVSETNAKSSETKAKSSEDSAATSASNAADANTKAMAHASDALAAQLEAEKARDTAIASKNAAKSSETKAAASASAAKTSQSAAKSSETKAAASVSSAANSASAAKNSADDTASSASEAKTAEVAAKKSRDEAESFAIELRKGSVYRGTWNPNSGSYPKTPVTNSRWDVQLNAGQLEKVFDGKTWNWGDRLVYILDEKKFDIIDSGTGVTSVNGETGAVTVTPQSIGAARKTGEVFTGNVEITHGGDAAFSVNGGTNKNAELSLTEANGYGTYIAYQGKDTNETHYGTINKGNKAPFMIARRGQNFPIFIGIPRVSVAQSSAGNSLIRRDWAQDTFLSKAGGTVSGGVEVTGNVTAGTFKLRGLTTSNKEVLKSAGDKVNVGNDSLDTVNILGTKLTHNDATIYTEKNKPTPYDLGAVAQGDGWKKYSKIYNVNKDIHAVLLNIEDKPLEMADKSYYIRAYTVGTGTFTGAVYYLKGFNQVGGSTGTTNLTLVARQGSGSNHPEVFLDKGVPKLRTGHDKTYRISVIIEEVDNDCNPWLDLTSAYSPINRMPWNKLKDIPTAATRWPSFNEVTGKPSKYPTDWDNVSGKPAMATRWPTWAEVGGNSYIKAVDTHLQVGSNKWLRASDNDTGFLPASPNTTGKSTLGTSGWWFATSYIAKMFAKGLDIVGNTKLNGDVHVVSNNGVNGLKVSRYTNPAVEYMNIRREDTTTYFDNFEDSSEADTVYGGFSFRGGQKDVNNDRLTELFYFSNQSIRYKGQDIYHTGNKPTPADIGALPENGTANNANHLESKTLAQVIADARNGLANTDYAYSKASADARFFRKGQDLRVGKSGEGILALDVGTNRNGTFYITEDNKQHGTYIRYQGATDNNTWFGTVNSGKEYTYMRVPRGSDQVIFNGSPRVSAAQSSYGDSLTRRDWVQSQLDTKASTSTATIGKVEMKAGSTIGGSRPQNASLVVEDTMGIDGNEVVSSTNLLLGTTRDYVDIRKGIETLARFSDTGLDLKSGTLKENGYRVYSNNNKPKIADLAQPDTVTKSLKLQANVWATLLTKSNLKESGVYQVLITYTSAGKGGVAYTQGYTGQFYWHAGNTNQDNVSEIPLHHMGHADSGEYIYLRTHAKPGNKGDHTVEIKCNRAYSAAVDFTVKLVKIM
Physico‐chemical
properties
protein length:1646 AA
molecular weight: 172900,36780 Da
isoelectric point:7,06051
aromaticity:0,06075
hydropathy:-0,55851

Domains

Domains [InterPro]
DC_1362
ATT
15–198
DC_1362 Coil Coil DC_0401 DC_0608 DC_1142
Coil
Unmapped
74–101
Coil
QIG60718.1
1 1646
Architecture
ATT
STR
ATT
STR
ATT 15-198 | STR 273-381 | ATT 478-963 | STR 1136-1368 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPT02
[NCBI] 		2698726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG60718.1 [NCBI]
Genbank nucleotide accession
MN954399.1 [NCBI]
CDS location
range 87101 -> 92041
strand -
CDS
ATGGCCGATAATATAAAGATAGAAGAAAGAGTACTTGACGGGGATTTAGTAGGCCCTGTCAATGCCGAAATAGATACAAAAGAGTTTACAGGTACAGTATCACTTGAGAACAGCTTACTAGATGGTAGTGGTTCTGAGATAAATGTAGAACTTTCCGAAAGCATGGAAGTTGTAGGTATTGACGACCTAGTAGAAGTAAAAAGTGAAATAGATAAGTCTGTAAGTAAAGCGGAGTCCTCAGTAGCCGAGTCTCAAAGACAGATAGATAAAGCTAATGAAACTATTAGAAACTTAGACGCTATTAGCGGTCAAATCACAAACTTAGTAGATACCGCAAAACAAGCAGCAGCTACAGCAGATAACCGTGCACACGATGCCCAAACTAGTGAAACAAACGCAGCAGGTTCAGCATCATCCGCCAAGAGCTCTCAAGCAGCCGCTAAAAGATCCCAGGATGCGGCAAAAGCTTCACAAACAGCAGCTAAGGCAAGTGAAACAGAAGCAAAAGCTCAGGCAGTAGAAGCAGCTAAGCAAGCAACAGCAGCTACGGCTCAAGCAACTATTGCTACCGATCAAGCTAAATCAGCAACAGCTTCAGCGGCTAAAGCAGATGCTGAACAAAAAGCAGCTTTGGCAGCACAAAAAGCAGCAGAAAAAGCTAGAGATCAAGCAGGCTCTAGTGCAGGAGATGCTTCTCAATCTGCTGGTAATGCTTATAGATCACAACAATTAGCAAAAGCTAGTGAAGATAAGGCAAACCAATATCAAGCAGATGCAGCTAAGTCATCAGCAGAAGCAGCAGCTTCAGCATCTTCAATGACTCAATCAGTAACAGATGCAAACGCTGCCAAGATAGCAGCAGAAGCGGCACAACTAGCCTCTGAAAATGCTAGAGATGTATCTACAGCTAAGTCAGTTGTGGCTTCTCAGAAAGCAGCGGCAGCAAGTACTTCAGCGGACGCAGCTAAAGCATCTCAGGATGCGGCAAAAGCTTCTCAGGATGCTGCAAAGATTAGTGAAACTAATGCTAAGAATAGTGAAGCCAAAGCAAAAACTAGTGAGACCAACGCTAAGACTAGTGAGACCAACGCGAAAAGTTCACAGACAGCTGCAGCTAATAGCGCTAAAGCATCTGATACCTCAGCAAAAGCTTCCCAAGCATCTCAGGTAGCTGCAAGTAAATCGGCAAGTCAAGCAGCTGCTAGTAAGCAAGCAGCTGCGGCATCTGCTAGTGCGTCAGAGCAATCAGCACAAGAATCTGAAAACTCTAATCAAGCATCACAAACCGCACAGACTAATGCAGAAGTAGCTCAAGCAGCAGCGGAAGCTGCTAGAGATGCAGCTAAAGTTAGTGAAACTAATGCTAAGTCTAGTGAAACAAAAGCTAGTACAGCAGCTACTACAGCTACAAGTCGTGCAGCTGCGTCCTCTAATTCGGCTAAAGCGGCAGCTACTAGTGCAAATCAAGCAGCTCAGTCTAAGAATGCAGCTAAAGTTAGTGAAACCAATGCTAAGTCTAGTGAAACCAAAGCAAAGTCTAGTGAAGACAGCGCAGCTACAAGCGCGTCTAACGCAGCCGACGCTAACACTAAAGCTATGGCACATGCTAGTGACGCGCTTGCAGCTCAACTTGAGGCTGAAAAGGCTCGTGATACAGCTATAGCCTCGAAAAATGCAGCTAAGTCTAGTGAGACAAAAGCAGCGGCAAGTGCATCAGCAGCAAAAACCTCCCAAAGTGCAGCTAAGTCTAGCGAAACAAAAGCAGCTGCTAGTGTTTCTTCAGCAGCTAATTCAGCTTCAGCGGCCAAAAATAGTGCTGATGACACAGCTAGTTCTGCTTCAGAGGCCAAAACAGCAGAAGTAGCAGCCAAAAAGTCTCGTGATGAAGCTGAAAGTTTTGCAATAGAACTTCGTAAAGGTAGTGTATATAGAGGTACATGGAACCCTAACTCTGGTAGCTATCCTAAAACCCCAGTTACTAACTCACGTTGGGATGTTCAGTTAAATGCCGGACAATTAGAGAAAGTATTTGATGGTAAAACATGGAACTGGGGTGACCGCCTAGTATACATTCTAGATGAGAAGAAATTCGATATTATTGATTCTGGTACTGGTGTTACTTCTGTAAACGGTGAGACTGGAGCTGTTACCGTAACCCCTCAAAGTATTGGTGCTGCTAGAAAAACCGGCGAAGTATTTACTGGTAACGTGGAAATTACTCATGGGGGTGATGCTGCATTCAGTGTTAATGGGGGTACTAATAAGAATGCAGAACTATCACTGACAGAAGCAAACGGGTATGGTACCTATATAGCCTATCAAGGCAAGGACACCAATGAAACCCACTATGGTACAATAAATAAGGGTAATAAAGCACCCTTCATGATTGCTCGTAGGGGGCAAAATTTCCCTATCTTTATAGGTATACCAAGAGTAAGTGTGGCACAATCTAGTGCTGGCAATTCACTTATACGTAGAGACTGGGCACAAGATACCTTCCTGAGTAAAGCAGGGGGAACGGTTTCAGGAGGGGTAGAAGTAACAGGTAACGTTACGGCGGGTACTTTTAAGTTAAGAGGACTAACTACTAGTAATAAAGAAGTATTAAAAAGCGCAGGAGATAAAGTTAATGTAGGTAACGATAGTTTAGATACTGTTAATATACTAGGTACTAAGTTAACGCATAATGATGCTACTATTTATACTGAGAAGAATAAACCTACCCCTTATGATTTAGGTGCAGTAGCTCAGGGAGATGGATGGAAGAAGTATAGTAAGATATACAACGTCAATAAAGATATTCACGCCGTTCTTCTTAATATAGAGGACAAGCCTCTAGAAATGGCTGACAAGTCCTATTATATTCGAGCATACACAGTAGGCACTGGTACATTTACTGGAGCAGTATACTACCTTAAAGGTTTTAACCAAGTAGGGGGTAGTACAGGTACAACTAACCTAACCTTAGTAGCTCGACAGGGGTCTGGTAGTAACCATCCAGAAGTATTTTTAGATAAAGGAGTACCTAAACTACGAACAGGGCATGATAAGACATATAGAATATCTGTTATTATAGAAGAAGTAGATAATGATTGTAACCCGTGGCTGGATTTAACATCAGCATACAGTCCAATAAATAGAATGCCGTGGAATAAATTGAAAGATATTCCAACAGCAGCAACAAGATGGCCTAGCTTCAATGAGGTTACTGGAAAGCCTAGTAAGTACCCTACCGACTGGGACAATGTTTCTGGTAAGCCAGCAATGGCTACACGTTGGCCTACGTGGGCTGAAGTAGGTGGTAATAGCTATATTAAAGCTGTCGATACTCATCTTCAAGTAGGGTCTAATAAATGGTTACGTGCTTCAGATAATGATACAGGGTTCTTGCCTGCATCCCCAAATACTACTGGTAAATCTACGTTAGGTACAAGCGGTTGGTGGTTTGCAACTTCTTATATAGCTAAGATGTTTGCTAAAGGGTTAGATATAGTTGGTAATACAAAACTAAATGGAGACGTTCATGTAGTATCTAACAACGGTGTTAATGGATTAAAAGTATCTAGATACACTAACCCTGCTGTTGAGTACATGAACATTAGGCGAGAAGATACTACTACTTACTTCGATAACTTTGAAGATTCTTCAGAGGCGGATACTGTATACGGTGGCTTTAGTTTCCGAGGAGGTCAGAAAGATGTAAATAACGATAGGCTTACAGAGTTATTTTACTTTAGTAATCAATCTATTCGTTATAAAGGTCAGGACATTTACCATACTGGTAATAAGCCAACCCCAGCAGATATTGGGGCCTTACCTGAAAATGGTACGGCTAACAATGCCAACCACCTTGAAAGTAAGACTCTAGCTCAGGTAATTGCAGATGCCCGTAATGGACTAGCAAATACTGACTATGCTTACTCTAAAGCAAGTGCGGATGCTCGCTTTTTCCGTAAAGGTCAAGACTTACGAGTTGGTAAATCAGGCGAAGGTATATTAGCGTTAGATGTAGGTACTAATCGAAATGGTACTTTCTATATAACCGAAGATAACAAGCAGCACGGTACATACATACGTTACCAAGGTGCTACTGATAACAATACTTGGTTTGGTACAGTAAATAGTGGTAAGGAATATACCTACATGAGGGTTCCTCGCGGTTCTGATCAAGTTATCTTTAATGGTAGTCCTAGAGTTAGTGCTGCGCAATCTAGTTATGGGGACTCATTAACTCGCAGAGATTGGGTTCAATCTCAGTTAGATACTAAGGCTAGTACTAGTACTGCTACTATTGGTAAAGTTGAGATGAAGGCCGGTTCTACTATAGGTGGCAGTAGGCCACAGAATGCCTCATTAGTAGTAGAAGATACAATGGGTATTGACGGTAATGAAGTTGTTTCTAGTACTAACCTGCTTCTAGGGACTACCAGAGATTACGTTGATATTAGAAAAGGCATAGAGACTTTAGCTAGATTCTCAGATACTGGTTTAGACCTTAAAAGTGGTACTCTGAAAGAAAATGGCTATAGAGTATACTCTAACAACAACAAGCCTAAGATTGCAGACCTAGCACAACCTGATACAGTTACTAAGAGTTTAAAACTCCAAGCCAATGTTTGGGCTACTCTGCTAACTAAATCAAACCTTAAAGAGTCTGGTGTGTATCAGGTATTAATTACTTATACTTCAGCAGGTAAAGGCGGGGTTGCTTACACTCAGGGCTATACTGGTCAATTCTACTGGCACGCAGGGAATACAAATCAAGATAACGTCTCTGAGATTCCGCTACACCATATGGGACATGCAGACAGTGGTGAGTATATTTATCTAAGAACTCATGCTAAGCCAGGTAACAAAGGTGATCATACCGTTGAAATCAAATGTAACCGAGCATACTCTGCTGCGGTAGACTTTACTGTTAAGCTCGTGAAAATAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
22d327c05230cc21f10ccccfa498c2711b904880101ded481a85165b358e9eb2
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6013
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VpT02 Kim,B.S. and Kim,M. 2012-06-15 — GenBank