Protein

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Genbank accession
XMR01498.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRLFDYGNITPDPSSGFRIISTGDALLLITKSGDLWVRGYNRYGKLGIGNNTTTYVLNWTKVRSDVKFACGSGLVTVIFTKGNRILYCGDKWFETGGVGSAQIFTWTDVTHQFGAVDLSTVRDMKMSYFTIGLLTTNNQLYAKGFDNNLSFGGVSNKATAVFIANNVQELYTSLVSTIYVDTSGILHRCGMSDNGSLGNNVNLTSYLSYSQTGMTIKDIGMMTTNTGLLYTDSSARTRYFIAGQNLNKQMGNAAAASAITSTYTELSGSVDKFSSLWANDGILMTFAVGKNTNQLFYAGTNTFHASGGVSSFADTYELVPMVFNDIQEVLCAQRLSVVHDSTKWYYCGDANSMYGLPDVSTFTELPLPF
Physico‐chemical
properties
protein length:373 AA
molecular weight: 40720,48320 Da
isoelectric point:6,07634
aromaticity:0,12332
hydropathy:-0,00268

Domains

Domains [InterPro]
DC_0433
ATT
1–133
DC_0433 DC_0886
IPR009091
STR
18–272
IPR009091
IPR009091
STR
26–327
IPR009091
DC_0433
ATT
118–227
DC_0433
XMR01498.1
1 373
Architecture
ATT
STR
RBD
ATT 1-227 | STR 228-327 | RBD 328-373
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01498.1
1 373
Domain Start End Length (AA) Confidence
N-terminal 1 285 285 0,1612
Central domain 286 362 78 0,4023
C-terminal 363 373 10 0,3400
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-285
Central
286-362
C-terminal
363-373

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey3
[NCBI] 		3375710 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01498.1 [NCBI]
Genbank nucleotide accession
PQ471515 [NCBI]
CDS location
range 351425 -> 352546
strand -
CDS
ATGTTACCTTTTGTTAGATTGTTTGATTATGGAAATATTACACCTGATCCTAGTTCGGGATTTCGAATAATAAGTACAGGAGACGCATTACTATTAATTACTAAGAGTGGTGATTTGTGGGTGCGTGGTTATAACCGTTATGGCAAGTTAGGTATAGGTAATAACACCACTACCTATGTACTTAATTGGACGAAGGTTAGAAGTGATGTAAAGTTTGCGTGTGGTAGTGGATTGGTAACAGTTATCTTTACTAAGGGTAATCGCATATTGTACTGTGGTGACAAATGGTTTGAAACGGGTGGTGTTGGTAGTGCACAGATTTTCACATGGACAGATGTTACGCACCAATTTGGAGCAGTAGATTTGAGTACAGTAAGGGATATGAAAATGTCTTATTTCACGATTGGATTATTGACTACTAATAATCAATTATACGCTAAGGGATTTGATAATAACCTATCATTTGGTGGGGTTAGTAATAAGGCGACTGCTGTGTTTATTGCGAATAATGTACAAGAGTTGTATACGAGTTTAGTTAGTACAATCTACGTTGATACAAGTGGTATATTACATCGTTGTGGTATGAGTGATAACGGTTCGTTGGGTAATAATGTTAATTTAACTTCGTATCTAAGTTATTCACAGACTGGTATGACGATTAAGGACATTGGAATGATGACTACGAACACTGGGTTATTATATACTGATTCTAGTGCACGCACGAGATATTTTATTGCTGGACAGAACTTGAATAAACAGATGGGTAATGCGGCGGCTGCGAGTGCCATTACGAGTACTTACACAGAGCTTTCTGGTAGTGTTGATAAGTTTTCTTCTTTATGGGCGAATGATGGGATATTGATGACATTTGCTGTGGGTAAGAACACTAATCAGTTATTTTATGCTGGGACGAATACTTTTCATGCGAGTGGTGGTGTATCTTCATTTGCGGATACATATGAGTTAGTCCCGATGGTGTTTAATGACATACAGGAAGTGTTATGTGCACAGCGTTTATCGGTGGTACATGATTCTACGAAGTGGTATTACTGTGGTGATGCTAATTCAATGTATGGTTTACCGGACGTAAGTACTTTTACTGAGTTACCGTTGCCCTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b718c09633d6a3552b6f0b77577e3f93a06a5a5664a67486e015fa7af1ebf740
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8336
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank