Protein

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Genbank accession
AGB07358.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,59
Protein sequence
MALISQSIKNLKGGISQQPDILRYPDQGSRQVNGWSSETEGLQKRPPLVFLKTLGDNGALGQAPYIHLINRDENEQYYAVFTGTGIRVFDLAGNEKQVRYPNGSNYIKTANPRSDLRMVTVADYTFIVNRNVVVQKDPNSVNLANYNPKQDGLINIRGGQYGRELIVHINGKDVATYKIPDGSKPEHVNNTDAQWLAERLAKQMRTNLSDWTVNVGQGFIHVTAPSGQQIDSFTTKDGYADQLINPVTHYAQSFSKLPPNAPNGYMVKIVGDASKSADQYYVRYDAERKVWTETLGWNTENQVLLETMPHALVRAADGNFDFKWLEWSPKSCGDVDTNPWPSFVGSSINDVFFFRNRLGFLSGENIILSRTAKYFNFYPASIANLSNDDPIDVAVSTNRIAILKYAVPFSEELLIWSDEAQFVLTASGTLTSRSVELNLTTQFDVQDRARPYGIGRNVYFASPRSSYTSIHRYYAVQDVSSVKNSEDITSHVPNYIPNGVFSICGSGTENFCSVLSHGDPSKIFMYKFLYLNEELRQQSWSHWDFGENVQVLACQSISSDMYVILRNEFNTFLARISFTKNAIDLQGEPYRAFMDMKIRYTIPSGTYNDDTFTTSIHIPTIYGANFGRGKITVLEPDGKITVFEQPTSGWQSDPWLRLSGNLEGREVFIGFNINFVYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYEDSGTFDIYVENQSSNWKYTMAGARLGSNTLRAGRLNLGTGQYRFPVVGNAKFNTVYILSDETTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 89383,91720 Da
isoelectric point:5,97545
aromaticity:0,11965
hydropathy:-0,39824

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
AGB07358.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGB07358.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9922
Central domain 143 348 207 0,1650
C-terminal 349 794 445 0,1791
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage R
[NCBI] 		1195074 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Yersinia pestis
[NCBI] 		632 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGB07358.1 [NCBI]
Genbank nucleotide accession
JX000007 [NCBI]
CDS location
range 22085 -> 24469
strand +
CDS
ATGGCACTCATTAGCCAATCAATCAAGAACTTGAAGGGTGGTATCAGCCAACAGCCTGACATCCTTCGTTATCCAGACCAAGGGTCACGCCAAGTTAACGGTTGGTCTTCGGAGACCGAGGGCCTCCAAAAGCGTCCACCTCTGGTTTTCTTAAAGACACTTGGAGACAACGGTGCGTTAGGTCAAGCGCCTTACATTCACCTGATTAACCGTGATGAAAACGAACAGTATTACGCTGTGTTCACTGGTACAGGAATACGTGTGTTTGACCTTGCTGGTAACGAGAAGCAAGTTAGGTATCCTAACGGTTCCAACTACATCAAGACCGCTAATCCACGTAGCGACCTGCGAATGGTTACTGTAGCAGACTATACGTTCATCGTTAACCGTAACGTTGTTGTACAGAAGGACCCAAATTCTGTCAACTTGGCGAATTACAACCCTAAGCAAGACGGATTGATTAACATTCGTGGTGGTCAGTATGGCAGGGAACTAATTGTACACATTAACGGTAAAGACGTTGCTACGTATAAGATCCCAGATGGTAGTAAACCTGAACACGTAAACAATACGGATGCCCAATGGTTAGCCGAAAGGTTAGCCAAGCAGATGCGCACTAACTTGTCTGATTGGACTGTAAATGTAGGGCAAGGGTTCATCCATGTGACCGCACCTAGTGGTCAACAGATTGACTCCTTCACGACTAAAGATGGCTATGCAGACCAGTTGATTAACCCTGTGACCCACTACGCTCAGTCGTTCTCTAAGTTGCCACCTAATGCTCCTAACGGCTACATGGTGAAAATCGTAGGGGACGCCTCTAAGTCTGCCGACCAGTATTACGTTCGGTATGACGCTGAGCGGAAAGTTTGGACTGAGACTTTAGGTTGGAACACTGAGAACCAAGTTCTATTGGAAACCATGCCACACGCTCTTGTGCGAGCCGCTGACGGTAATTTCGACTTCAAGTGGCTTGAGTGGTCTCCTAAGTCTTGTGGTGACGTTGACACTAACCCTTGGCCTTCTTTTGTTGGTTCAAGTATTAACGATGTGTTCTTCTTCCGTAACCGCTTAGGATTCCTTAGTGGGGAGAACATCATATTGAGTCGTACAGCCAAATACTTCAACTTCTACCCTGCGTCCATTGCTAACCTTAGTAATGACGACCCTATAGACGTAGCTGTGAGTACCAACCGAATAGCAATCCTTAAGTACGCAGTTCCGTTCTCAGAAGAGTTACTCATCTGGTCCGATGAAGCACAATTCGTCCTGACTGCTTCTGGAACTCTCACGTCTAGGTCGGTTGAGTTGAACCTAACGACTCAGTTTGACGTACAGGACCGAGCGAGACCTTATGGGATTGGCCGTAATGTCTACTTTGCTAGTCCGAGGTCCAGCTACACGTCCATCCACAGGTACTACGCCGTGCAGGATGTAAGTTCCGTTAAGAACTCTGAGGATATCACATCACACGTTCCTAACTACATCCCTAATGGTGTGTTTAGTATTTGTGGTAGTGGTACGGAAAACTTCTGTTCGGTACTATCTCACGGGGACCCAAGTAAAATCTTCATGTACAAATTCCTGTACCTGAACGAAGAGTTAAGGCAACAGTCGTGGTCACATTGGGACTTTGGGGAAAACGTACAGGTTCTAGCGTGTCAGAGTATCAGCTCAGATATGTACGTTATTCTTCGCAATGAGTTCAATACGTTCCTAGCTAGAATCTCTTTCACTAAGAACGCCATTGACTTACAAGGTGAACCCTATCGTGCCTTTATGGACATGAAGATTCGCTACACGATTCCTAGTGGAACATACAACGATGACACATTCACTACCTCTATCCATATTCCAACCATTTATGGTGCAAACTTCGGGAGAGGCAAAATCACCGTATTGGAGCCTGATGGTAAGATAACCGTATTTGAGCAACCTACATCTGGGTGGCAAAGCGACCCTTGGCTGAGACTCAGCGGTAACTTAGAGGGACGTGAAGTGTTCATTGGGTTCAACATCAACTTCGTCTATGAGTTCTCTAAGTTCCTCATCAAGCAAACTGCCGACGACGGGTCTACCTCCACGGAAGACATTGGTCGTTTACAGTTACGCAGAGCGTGGGTTAACTATGAGGATTCTGGTACGTTCGACATTTATGTTGAGAACCAATCGTCAAACTGGAAGTACACAATGGCTGGTGCTCGATTAGGCTCTAATACTCTGAGGGCTGGGCGATTGAACTTAGGGACCGGACAATACAGATTCCCTGTGGTTGGTAACGCCAAGTTCAATACCGTGTACATCTTGTCAGATGAGACTACACCTCTGAACATCATTGGGTGTGGCTGGGAAGGAAACTACTTACGGAGAAGTTCCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
99180a36367f046c471b5100d8dca700e957627694ae42ddf5c80483b1bc0d10
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9015
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Characterization of Yersinia pestis-Specific Bacteriophages R and Y, and Comparison to the Closely Related Typing Phage phiA1122 Cox,C.R. and Voorhees,K.J. 1990-04 — GenBank