Protein

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Genbank accession
AXN54199.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGAGIYIGLNDGRPAMEITSGLRAFSHAGDFNIQNAGFSQSFSIKDLTGGDKFLIPKVGAYAFELDRGVETYFISGFSASGGTARISISGENAYSDRITNFSGSVFEIAKASTGEGILVADSTDFASITTNDTLMSCLWVGSVSFNGSYTMPVAGVPFGNWSNSGVSVEFDGNNKLICTNTNTSATGDTYGSVTMNLAIFSKSPPSPGDGITIINKNNQCVFSTKQRPLVVKGFIALSNSYQTIGDAFFPILRCGFNTRAISAYKELRYKGIMMYNGQVKSGTGSRIVRYEIGNRPDFCIGMNLPYLPVIY
Physico‐chemical
properties
protein length:311 AA
molecular weight: 33274,17050 Da
isoelectric point:7,54773
aromaticity:0,11576
hydropathy:0,00064

Domains

Domains [InterPro]
IPR045604
STR
4–291
IPR045604
AXN54199.1
1 311
Architecture
STR
STR 4-291 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXN54199.1
1 311
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,7722
Central domain 14 212 200 0,0163
C-terminal 213 311 98 0,9981
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-212
C-terminal
213-311

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage mEp021
[NCBI] 		1150757 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli str. K-12 substr. W3110
[NCBI] 		316407 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXN54199.1 [NCBI]
Genbank nucleotide accession
MH706966 [NCBI]
CDS location
range 51741 -> 52676
strand -
CDS
ATGGGGGCGGGTATATATATTGGGCTGAATGACGGACGCCCTGCAATGGAAATAACAAGCGGGTTGCGTGCGTTCTCACACGCTGGAGATTTCAATATTCAAAATGCTGGGTTTTCGCAAAGTTTTTCCATAAAGGATTTAACTGGCGGCGATAAGTTTCTAATCCCAAAGGTAGGCGCTTACGCGTTTGAGCTTGACAGGGGTGTTGAAACATATTTTATATCAGGCTTTAGTGCTTCTGGTGGCACGGCAAGGATTTCAATTAGTGGTGAGAACGCATATTCTGATAGGATCACTAATTTTAGCGGTAGCGTGTTTGAGATAGCAAAGGCGTCTACTGGTGAGGGTATATTAGTTGCAGATAGCACAGATTTTGCATCGATAACGACTAACGATACATTGATGTCATGTTTATGGGTTGGGAGTGTTAGCTTTAATGGTTCTTACACTATGCCAGTTGCCGGTGTTCCTTTCGGTAACTGGAGCAATAGCGGTGTTTCAGTTGAGTTTGACGGAAACAATAAATTGATCTGTACAAACACAAACACTTCTGCAACTGGTGACACATATGGATCGGTAACGATGAATTTGGCTATTTTTAGCAAATCACCGCCATCACCTGGCGACGGAATAACCATCATTAATAAAAATAATCAATGCGTGTTTTCAACAAAACAAAGGCCATTGGTTGTTAAGGGATTTATAGCGTTATCGAATAGTTACCAGACAATAGGTGACGCGTTCTTCCCAATATTGAGATGCGGCTTTAATACTAGAGCTATATCAGCATACAAGGAACTAAGATACAAAGGCATTATGATGTACAACGGGCAGGTGAAAAGCGGAACAGGATCAAGGATTGTCAGGTATGAAATAGGTAACAGGCCGGATTTCTGTATAGGTATGAATCTTCCTTATTTGCCAGTAATTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2bb11cc4f9d94cbfd90682cb499445b2b5cdf46f177973760119d8ba9c51d6c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8132
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of mEp021, a novel coliphage frequently found in mammalian gut Martinez-Penafiel,E., Sepulveda-Robles,O., Flores,V., Rios-Castro,E., Cazares,A., Caraballo,G., Reyes-Cortes,R., Arzate-Barbosa,P., Fernandez-Ramirez,F. and Kameyama,L. 2019-10-17 — GenBank