Protein

View in Explore
Genbank accession
QDH85452.1 [GenBank]
Protein name
capsid protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAKINRTVLHDSVPTFNRFSAGGVVRTINDLFMDVEDNIWKFNGDIPHFVQPHTQPQSPLWSLVTRSSFKIETGSVSILEFGAVAGQDCTDAFKKALETGKAITIPDTSYDKPYIITSDVQLPLVSRVLGTSPAFPIGYEERYGFTGSYIQFDGGRFLGGTGPNDRVFMYWSDLMFFGKHGANVEDKSLLSNAGTAFSGSIGGYINNVSFAGLEYGMVNPDAYFLNISNVRANNNYWVFKLDDFNSSSIENYFGSYNNINIDLGADAARSTLRNIGINMNTHTELGIRFEGGVSLDGYIYFENFGTPASGSCCLAINFGRFSNRSVDVSNVLFHADRCDYCLSLGATTNQPVRISGTLRNCDWYTPKIAKVGYGVVSRFNGERTYPTAVIKNVPFSTHNGLSLTDLQKPDNSPYKKWVQGSRTSWRIVQTLPITQSISNIPLSGSAVTSTNVESTYNAGSVELPTSGTYMFNGTVTINNNTSKFVRTVKVDLRHKGGIIDSSLCSVQPRVSSGASYNTVSVSCTFEGVIGDSVSITVSGDGGSVYSAALNLVNLTSD
Physico‐chemical
properties
protein length:557 AA
molecular weight: 60588,01370 Da
isoelectric point:6,09606
aromaticity:0,11131
hydropathy:-0,14596

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH85452.1
1 557
Domain Start End Length (AA) Confidence
N-terminal 1 89 89 0,9922
Central domain 90 405 317 0,9896
C-terminal 406 557 151 0,9777
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-89
Central
90-405
C-terminal
406-557

Taxonomy

  Name Taxonomy ID Lineage
Phage Proteus phage vB_PmiP_RS1pmA
[NCBI] 		2250312 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Novosibovirus
Host Proteus mirabilis
[NCBI] 		584 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH85452.1 [NCBI]
Genbank nucleotide accession
MG575418 [NCBI]
CDS location
range 40050 -> 41723
strand +
CDS
ATGGCTAAAATAAATAGAACTGTACTTCATGATAGTGTACCAACTTTTAACAGGTTCAGTGCTGGTGGAGTAGTCCGCACCATTAATGACTTATTTATGGACGTAGAGGATAATATCTGGAAATTTAATGGAGATATCCCTCATTTTGTACAACCACACACACAACCACAATCGCCATTGTGGAGTCTTGTGACTCGTAGTAGTTTTAAAATCGAGACAGGTTCTGTTAGCATATTAGAATTTGGTGCTGTTGCTGGACAAGACTGTACAGATGCATTTAAGAAAGCTCTTGAAACTGGTAAAGCAATTACTATCCCAGATACATCTTATGATAAACCGTACATTATTACAAGTGATGTACAATTACCACTAGTATCCAGAGTACTAGGTACATCTCCTGCGTTCCCTATTGGATACGAAGAACGGTACGGATTCACGGGTTCGTACATCCAATTTGATGGTGGTAGATTTTTAGGTGGTACTGGTCCTAACGATAGGGTTTTTATGTACTGGAGTGATTTGATGTTCTTCGGTAAACACGGGGCTAATGTAGAGGATAAGAGTTTACTAAGTAATGCAGGTACCGCTTTCAGTGGCTCTATAGGGGGGTACATTAATAATGTATCCTTTGCTGGGTTAGAGTACGGTATGGTGAACCCTGATGCTTATTTCCTAAACATTAGTAATGTACGAGCTAATAATAATTATTGGGTTTTCAAATTAGATGATTTTAATTCTAGCTCTATAGAGAATTACTTCGGTTCGTACAATAACATCAACATAGACTTAGGAGCAGACGCAGCAAGAAGTACCCTCCGTAATATAGGTATAAACATGAACACACACACAGAATTGGGTATACGTTTTGAAGGTGGGGTGAGCTTGGATGGTTATATCTATTTTGAAAATTTTGGAACCCCAGCTAGTGGTTCTTGTTGTCTAGCTATTAATTTTGGTAGATTCAGTAATAGAAGTGTAGATGTATCAAATGTTTTATTTCATGCTGATAGATGTGATTACTGTTTATCTTTAGGTGCTACAACGAATCAACCTGTACGAATCTCTGGTACACTTAGGAATTGTGATTGGTACACTCCTAAGATTGCAAAAGTAGGTTACGGTGTGGTTAGTAGATTTAACGGTGAGAGGACGTACCCGACTGCTGTTATTAAGAATGTACCATTCAGTACTCATAATGGTTTATCTCTAACTGATCTACAAAAGCCGGATAATTCCCCGTATAAAAAGTGGGTTCAAGGTAGCCGTACTTCTTGGAGAATTGTACAAACACTACCTATTACCCAAAGCATTTCAAATATACCTTTGTCTGGTAGTGCAGTTACAAGTACTAATGTAGAAAGCACCTACAACGCTGGAAGTGTTGAATTACCAACTAGTGGTACGTACATGTTCAATGGTACTGTTACAATAAACAATAATACCTCAAAGTTTGTACGTACTGTTAAAGTGGACTTACGACATAAAGGGGGTATTATAGATAGCTCTCTTTGCTCAGTACAACCACGGGTGTCTTCGGGAGCTAGTTATAACACAGTTTCGGTTAGTTGTACTTTTGAAGGCGTAATAGGAGATTCTGTATCTATTACTGTGTCAGGTGATGGGGGTTCTGTGTACTCAGCAGCATTGAATTTGGTAAACCTTACTTCTGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3e354de44ecdcb0eddd3c1e0a38b11321165955b9d5ef4e8de3a6f148a4ad7a3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7217
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and ecogenomic characterisation of Proteus mirabilis bacteriophage supports development of cocktails for phage therapy Alves,D.R., Nzakizwanayo,J., Dedi,C., Olympiou,C., Hanin,A., Kot,W., Hansen,L., Gahan,C., Schellenberge,P., Ogilvie,L.A. and Jones,B.V. 2019-08-06 — GenBank